miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 73452 0.71 0.301192
Target:  5'- aCCCAgGC-CGGGgugGCCgGCcCGGCCGCc -3'
miRNA:   3'- -GGGU-CGaGCCCg--CGGgUGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 72686 0.71 0.301192
Target:  5'- gCCCGaaUCGGGCGCCCgACgauguauggGCGGUgGCc -3'
miRNA:   3'- -GGGUcgAGCCCGCGGG-UG---------UGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 19024 0.71 0.307793
Target:  5'- gCCCAGgUCGGGgGUCCAuCGUGcGCUGCu -3'
miRNA:   3'- -GGGUCgAGCCCgCGGGU-GUGC-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 26975 0.71 0.307793
Target:  5'- gCCgCGGCUCGuGG-GCCCGCGagcgGGCCGa -3'
miRNA:   3'- -GG-GUCGAGC-CCgCGGGUGUg---CCGGCg -5'
5777 5' -64.1 NC_001806.1 + 26921 0.71 0.308459
Target:  5'- cCCCAcGUcCGGGUGCgCCACcuggugucugggccuCGGCCGCc -3'
miRNA:   3'- -GGGU-CGaGCCCGCG-GGUGu--------------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 93588 0.71 0.312479
Target:  5'- -gCGGCcCGGGgGCCCcgggaccggcauuuGC-CGGCCGCa -3'
miRNA:   3'- ggGUCGaGCCCgCGGG--------------UGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 83669 0.71 0.314503
Target:  5'- -aCGGCg-GGGUGCCCGgGCGGCaUGCc -3'
miRNA:   3'- ggGUCGagCCCGCGGGUgUGCCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 123344 0.71 0.314503
Target:  5'- cCUCGGUUUGuuGGCGCCUuUAUGGCUGCa -3'
miRNA:   3'- -GGGUCGAGC--CCGCGGGuGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 120003 0.71 0.314503
Target:  5'- uCCCGcGCUCGaGGUGCCCcuGCGCcacCCGCg -3'
miRNA:   3'- -GGGU-CGAGC-CCGCGGG--UGUGcc-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 21284 0.71 0.314503
Target:  5'- gCCCGGCgggaCGGGaggGCCCcCGCGGCgGg -3'
miRNA:   3'- -GGGUCGa---GCCCg--CGGGuGUGCCGgCg -5'
5777 5' -64.1 NC_001806.1 + 148120 0.71 0.317219
Target:  5'- gCCGGCUgGGGggcugcgugagaCGCCCcgcccgucacgggggGCGCGGCgGCg -3'
miRNA:   3'- gGGUCGAgCCC------------GCGGG---------------UGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 73989 0.71 0.321325
Target:  5'- cCCCGGC-CgGGGCGgcCCCGCAgGGggcuCCGCg -3'
miRNA:   3'- -GGGUCGaG-CCCGC--GGGUGUgCC----GGCG- -5'
5777 5' -64.1 NC_001806.1 + 25865 0.71 0.321325
Target:  5'- -gCAGCcCGGGCcCCC-CGCGGgCGCg -3'
miRNA:   3'- ggGUCGaGCCCGcGGGuGUGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 84828 0.71 0.321325
Target:  5'- cUCCGGCcCGGGC-CCUAuCACGGCaaggaGCg -3'
miRNA:   3'- -GGGUCGaGCCCGcGGGU-GUGCCGg----CG- -5'
5777 5' -64.1 NC_001806.1 + 1515 0.7 0.327557
Target:  5'- cUCCAGCagggcgCGGGCGCaaaagucCCucCGCGGcCCGCg -3'
miRNA:   3'- -GGGUCGa-----GCCCGCG-------GGu-GUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 150664 0.7 0.327557
Target:  5'- gUUGGC-CGGGC-CCCGCcgcgcugGCGGCCGCc -3'
miRNA:   3'- gGGUCGaGCCCGcGGGUG-------UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 22774 0.7 0.328255
Target:  5'- gCCgGGCgcc-GCGCCCAgGcCGGCCGCg -3'
miRNA:   3'- -GGgUCGagccCGCGGGUgU-GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 3312 0.7 0.328255
Target:  5'- -gCGGCggggaagCGGG-GCCCGCGggucccucCGGCCGCg -3'
miRNA:   3'- ggGUCGa------GCCCgCGGGUGU--------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 69239 0.7 0.333173
Target:  5'- -gCAGCUCGGGgagcaGCCCuccgccggcgcccaGCAgCGGCUGCu -3'
miRNA:   3'- ggGUCGAGCCCg----CGGG--------------UGU-GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 141845 0.7 0.335297
Target:  5'- gCCAGCUCaGGC-UCCAUcaGgGGCCGCc -3'
miRNA:   3'- gGGUCGAGcCCGcGGGUG--UgCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.