Results 81 - 100 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5777 | 5' | -64.1 | NC_001806.1 | + | 141845 | 0.7 | 0.335297 |
Target: 5'- gCCAGCUCaGGC-UCCAUcaGgGGCCGCc -3' miRNA: 3'- gGGUCGAGcCCGcGGGUG--UgCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 102831 | 0.7 | 0.335297 |
Target: 5'- cCCCgacgAGC-CGGuCGCCC-CGCGGcCCGCg -3' miRNA: 3'- -GGG----UCGaGCCcGCGGGuGUGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 24304 | 0.7 | 0.341727 |
Target: 5'- gCCGGCggcgCGGGaccuGCgCCGCACggugcuggccucgGGCCGCg -3' miRNA: 3'- gGGUCGa---GCCCg---CG-GGUGUG-------------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 123750 | 0.7 | 0.342447 |
Target: 5'- cCCCacggGGCcucCGGGCGCCCcaGCGGCCc- -3' miRNA: 3'- -GGG----UCGa--GCCCGCGGGugUGCCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 22059 | 0.7 | 0.348976 |
Target: 5'- gCCCGGCgcCGGGCcCCCGCccccgggGCGGgUGCu -3' miRNA: 3'- -GGGUCGa-GCCCGcGGGUG-------UGCCgGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 86741 | 0.7 | 0.349707 |
Target: 5'- gCCCGG---GGGCGCgCAUGuCGGCCGCc -3' miRNA: 3'- -GGGUCgagCCCGCGgGUGU-GCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 149657 | 0.7 | 0.349707 |
Target: 5'- gCCCGGCUCccguguaugaguGGGgGUCCcccaACAUGGCgGCc -3' miRNA: 3'- -GGGUCGAG------------CCCgCGGG----UGUGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 33354 | 0.7 | 0.349707 |
Target: 5'- cCCCGGCUgcagGGGgGCCCGgAgaGCCGCg -3' miRNA: 3'- -GGGUCGAg---CCCgCGGGUgUgcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 21596 | 0.7 | 0.349707 |
Target: 5'- gCCCAGCcgccgCGGaGaCGUCguCACGGCCGg -3' miRNA: 3'- -GGGUCGa----GCC-C-GCGGguGUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 4345 | 0.7 | 0.349707 |
Target: 5'- gCCCGGCggCGcucgauGCgGCCCGCGgaGGCCGCg -3' miRNA: 3'- -GGGUCGa-GCc-----CG-CGGGUGUg-CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 50581 | 0.7 | 0.352642 |
Target: 5'- gCCguGCU-GGGCGCUgcgguguacgcgcugCACACGGCCcugGCg -3' miRNA: 3'- -GGguCGAgCCCGCGG---------------GUGUGCCGG---CG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 79503 | 0.7 | 0.356334 |
Target: 5'- -aCGGCUcgcgaagcacgacCGGGCGUCCcggccgaaagcACGCGGCCGg -3' miRNA: 3'- ggGUCGA-------------GCCCGCGGG-----------UGUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 23223 | 0.7 | 0.357076 |
Target: 5'- gCCAGCgcacCGGaCGCCgccgacgcgCugGCGGCCGCc -3' miRNA: 3'- gGGUCGa---GCCcGCGG---------GugUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 59493 | 0.7 | 0.357076 |
Target: 5'- --aGGCUCGGGUGuCCCGgACcGUCGCa -3' miRNA: 3'- gggUCGAGCCCGC-GGGUgUGcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 23823 | 0.7 | 0.364553 |
Target: 5'- cCCCuGCgcgccUCGGGCccgcuGCgCCGCAUGGCgGCc -3' miRNA: 3'- -GGGuCG-----AGCCCG-----CG-GGUGUGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 41718 | 0.7 | 0.364553 |
Target: 5'- cCCCGGgacuggCGGGCGCaaACGCGGgccacCCGCg -3' miRNA: 3'- -GGGUCga----GCCCGCGggUGUGCC-----GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 136363 | 0.7 | 0.364553 |
Target: 5'- aCCCggGGC-CGGcGCGCUC-CGCGGCCuccGCg -3' miRNA: 3'- -GGG--UCGaGCC-CGCGGGuGUGCCGG---CG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 117689 | 0.7 | 0.372138 |
Target: 5'- --aAGCUCGGGgcccgaGCCCGCGuCGGCCc- -3' miRNA: 3'- gggUCGAGCCCg-----CGGGUGU-GCCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 1677 | 0.7 | 0.375202 |
Target: 5'- gUCCGGCgcgcCGGGCGCCaugGCGucggugguccccgaGGCCGCc -3' miRNA: 3'- -GGGUCGa---GCCCGCGGg--UGUg-------------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 33615 | 0.69 | 0.37983 |
Target: 5'- aCCGGCgcgGGGCGgggggccggauaCCCACACGGgCGg -3' miRNA: 3'- gGGUCGag-CCCGC------------GGGUGUGCCgGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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