miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 37763 0.69 0.37983
Target:  5'- gUCGGCggCGGGCGCCUuucgcucCGgGGCCGg -3'
miRNA:   3'- gGGUCGa-GCCCGCGGGu------GUgCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 72385 0.69 0.37983
Target:  5'- cCCgCGGCUCcuGCGgaCUugACGGCCGCg -3'
miRNA:   3'- -GG-GUCGAGccCGCg-GGugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 33615 0.69 0.37983
Target:  5'- aCCGGCgcgGGGCGgggggccggauaCCCACACGGgCGg -3'
miRNA:   3'- gGGUCGag-CCCGC------------GGGUGUGCCgGCg -5'
5777 5' -64.1 NC_001806.1 + 75688 0.69 0.382936
Target:  5'- gCCCAGC----GCGCCCgcaguagccacgagcGCugGGCCGCc -3'
miRNA:   3'- -GGGUCGagccCGCGGG---------------UGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 49358 0.69 0.386843
Target:  5'- uCCCGGCagcgcccCGGGCccgaugcgGCCCguagccagucgguGCGCGGUCGCc -3'
miRNA:   3'- -GGGUCGa------GCCCG--------CGGG-------------UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 59948 0.69 0.386843
Target:  5'- aCCCAGCUCuGccuuuuccaacauGCGCCgGCGCGGCa-- -3'
miRNA:   3'- -GGGUCGAGcC-------------CGCGGgUGUGCCGgcg -5'
5777 5' -64.1 NC_001806.1 + 119180 0.69 0.387627
Target:  5'- gCUCuGCUUGGcGCcgccgcCCCGC-CGGCCGCg -3'
miRNA:   3'- -GGGuCGAGCC-CGc-----GGGUGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 151327 0.69 0.387627
Target:  5'- gCCGGCUCGGGCgggggGCUguC-CGGCCa- -3'
miRNA:   3'- gGGUCGAGCCCG-----CGGguGuGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 27073 0.69 0.387627
Target:  5'- gCCCGuGCcCGGGCccugGCCCGCGgagcCGGCCcgGCg -3'
miRNA:   3'- -GGGU-CGaGCCCG----CGGGUGU----GCCGG--CG- -5'
5777 5' -64.1 NC_001806.1 + 123195 0.69 0.395529
Target:  5'- aCCCc-C-CGGGuCGCCCGCAgGGUgGCg -3'
miRNA:   3'- -GGGucGaGCCC-GCGGGUGUgCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 1723 0.69 0.395529
Target:  5'- gCCCGGC-CGuccaGCGCCggcaGCACGGCCcgGCg -3'
miRNA:   3'- -GGGUCGaGCc---CGCGGg---UGUGCCGG--CG- -5'
5777 5' -64.1 NC_001806.1 + 57059 0.69 0.401121
Target:  5'- cCCCGGCUgcgugcCGGGCuCCCcgagacuccacagaACAagGGCCGCu -3'
miRNA:   3'- -GGGUCGA------GCCCGcGGG--------------UGUg-CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 3603 0.69 0.403534
Target:  5'- aCCCGGCgggcacCGcGCGCUCGCccgguGCGGCgGCg -3'
miRNA:   3'- -GGGUCGa-----GCcCGCGGGUG-----UGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 118786 0.69 0.403534
Target:  5'- cCCCGGaCUCGGGaCGgCCGCAaacuuccaGGUCGa -3'
miRNA:   3'- -GGGUC-GAGCCC-GCgGGUGUg-------CCGGCg -5'
5777 5' -64.1 NC_001806.1 + 98134 0.69 0.403534
Target:  5'- aUCAGCUCGcGGCccgggGCCUGCuACaGCCGCc -3'
miRNA:   3'- gGGUCGAGC-CCG-----CGGGUG-UGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23106 0.69 0.403534
Target:  5'- gCCggGGCccUGGGC-CCCGCGCuGCCGCg -3'
miRNA:   3'- gGG--UCGa-GCCCGcGGGUGUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 45279 0.69 0.403534
Target:  5'- cCUUAGCggCGGGagacgcggGCCCGCGCGgggaGCCGCc -3'
miRNA:   3'- -GGGUCGa-GCCCg-------CGGGUGUGC----CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 47044 0.69 0.403534
Target:  5'- uCCCGcGCcgUCGGGCGuCCCACACucucugGGCgGg -3'
miRNA:   3'- -GGGU-CG--AGCCCGC-GGGUGUG------CCGgCg -5'
5777 5' -64.1 NC_001806.1 + 137645 0.69 0.410825
Target:  5'- aCCCugggguuGGCcgaGGGCGCCCugACGCGGuuGg -3'
miRNA:   3'- -GGG-------UCGag-CCCGCGGG--UGUGCCggCg -5'
5777 5' -64.1 NC_001806.1 + 52449 0.69 0.41164
Target:  5'- gCUUGGUUCGGGgcCGCCC---UGGCCGCg -3'
miRNA:   3'- -GGGUCGAGCCC--GCGGGuguGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.