miRNA display CGI


Results 121 - 140 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 52449 0.69 0.41164
Target:  5'- gCUUGGUUCGGGgcCGCCC---UGGCCGCg -3'
miRNA:   3'- -GGGUCGAGCCC--GCGGGuguGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 151700 0.69 0.417375
Target:  5'- --gGGCcCGGGCuGCCCGCcgccaccgcuuuaaAgGGCCGCg -3'
miRNA:   3'- gggUCGaGCCCG-CGGGUG--------------UgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 46194 0.69 0.419022
Target:  5'- aCCCAGCggGuGGCgacuaagGCCCcCGCGGCCccgGCg -3'
miRNA:   3'- -GGGUCGagC-CCG-------CGGGuGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 82022 0.69 0.419848
Target:  5'- gUCCGGCaucuUCGGG-GCCCaugaaccgaaACGCGaGCUGCa -3'
miRNA:   3'- -GGGUCG----AGCCCgCGGG----------UGUGC-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 147807 0.69 0.419848
Target:  5'- gCCUGGCaUGGGCGCCgCGgGgGGCCuGUg -3'
miRNA:   3'- -GGGUCGaGCCCGCGG-GUgUgCCGG-CG- -5'
5777 5' -64.1 NC_001806.1 + 69103 0.69 0.419848
Target:  5'- gCCCGcGCUCGGccuguGCGCCCcCGgGGaCGCu -3'
miRNA:   3'- -GGGU-CGAGCC-----CGCGGGuGUgCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 22635 0.69 0.419848
Target:  5'- aCCgGGCgagcgCGcGGUGCCCGCcggguACGgcGCCGCg -3'
miRNA:   3'- -GGgUCGa----GC-CCGCGGGUG-----UGC--CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 96369 0.68 0.428153
Target:  5'- gCCAuGCgccaGGGCGCCCccGCGCGGgggCGCc -3'
miRNA:   3'- gGGU-CGag--CCCGCGGG--UGUGCCg--GCG- -5'
5777 5' -64.1 NC_001806.1 + 86800 0.68 0.428153
Target:  5'- gCCCAGCgcgCGuGGaCGUacuCGCGGUCGCg -3'
miRNA:   3'- -GGGUCGa--GC-CC-GCGgguGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 132895 0.68 0.428153
Target:  5'- gCCCAGCUCcuGGCgGCCC---UGGCCGa -3'
miRNA:   3'- -GGGUCGAGc-CCG-CGGGuguGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 128501 0.68 0.428153
Target:  5'- uUCCGGCgaucagCGuGGCGUgcggcauggCCAUGCGGgCCGCa -3'
miRNA:   3'- -GGGUCGa-----GC-CCGCG---------GGUGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 43475 0.68 0.428153
Target:  5'- cCCgGGUUCGaGGCcCCCACGaucgacggGGCCGUg -3'
miRNA:   3'- -GGgUCGAGC-CCGcGGGUGUg-------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 30950 0.68 0.428153
Target:  5'- gCCCAuCUCGGGgGUCUcuaGCGUGGUCGCc -3'
miRNA:   3'- -GGGUcGAGCCCgCGGG---UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 4272 0.68 0.428153
Target:  5'- gUCCAGCUCgacccgccgGGGCuGCCCGgccgugaaGCGGcCCGUg -3'
miRNA:   3'- -GGGUCGAG---------CCCG-CGGGUg-------UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 70960 0.68 0.43571
Target:  5'- gUCAGCUCGGccgaccaGCGCgC-CGCGGCCa- -3'
miRNA:   3'- gGGUCGAGCC-------CGCGgGuGUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 146665 0.68 0.436554
Target:  5'- cCCCGGaccaCGGGUGCcgagaCCGCA-GGCUGCg -3'
miRNA:   3'- -GGGUCga--GCCCGCG-----GGUGUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 65648 0.68 0.436554
Target:  5'- cCCCGGCggccucccccUGGGUGgCUGCGCuggGGCCGCc -3'
miRNA:   3'- -GGGUCGa---------GCCCGCgGGUGUG---CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 81359 0.68 0.436554
Target:  5'- -gCGGC-CGGGgcguCGCCCGCGaacauaGGCUGCg -3'
miRNA:   3'- ggGUCGaGCCC----GCGGGUGUg-----CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 69856 0.68 0.439941
Target:  5'- uCCC--CUCGGGCaGCCCagccACGCccccucuguccaccuGGCCGCg -3'
miRNA:   3'- -GGGucGAGCCCG-CGGG----UGUG---------------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 129642 0.68 0.444196
Target:  5'- aCCgAGCUCcugcaGGcugcccuGCGCCCGCcCGGgCCGCc -3'
miRNA:   3'- -GGgUCGAG-----CC-------CGCGGGUGuGCC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.