Results 41 - 60 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5777 | 5' | -64.1 | NC_001806.1 | + | 140015 | 0.66 | 0.561771 |
Target: 5'- gUCAGCUccucgcgCGGcgaaaGCGCCCGgagcgcCACGGCCGg -3' miRNA: 3'- gGGUCGA-------GCC-----CGCGGGU------GUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 24353 | 0.66 | 0.561771 |
Target: 5'- uUCGGCcCGGGgGUCUucGCGCgcguggaGGCCGCg -3' miRNA: 3'- gGGUCGaGCCCgCGGG--UGUG-------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 126906 | 0.66 | 0.558938 |
Target: 5'- aCCCAGCaa-GGCGUCCAUucucccgaaccaGGCCGUu -3' miRNA: 3'- -GGGUCGagcCCGCGGGUGug----------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 7031 | 0.66 | 0.557051 |
Target: 5'- cCCCAGUUgggcCGGGCGaCCCagauguuuacuuaaaAgGCGuGCCGUc -3' miRNA: 3'- -GGGUCGA----GCCCGC-GGG---------------UgUGC-CGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 94944 | 0.66 | 0.553284 |
Target: 5'- uUCUGGCUCGcguccGGCGaCCGCGCcGGCCa- -3' miRNA: 3'- -GGGUCGAGC-----CCGCgGGUGUG-CCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 51017 | 0.66 | 0.553284 |
Target: 5'- cCCCguaAGCggCGGGUccguguuggGCCCGCG-GGuCCGCg -3' miRNA: 3'- -GGG---UCGa-GCCCG---------CGGGUGUgCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 73928 | 0.66 | 0.553284 |
Target: 5'- gCCCucGCUCGcGGgGUCgACGCGGUCu- -3' miRNA: 3'- -GGGu-CGAGC-CCgCGGgUGUGCCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 84081 | 0.66 | 0.553284 |
Target: 5'- cCCCAGCUgcgcgcugccgCGGaG-GCCCGucgcgcCACGGuCCGCc -3' miRNA: 3'- -GGGUCGA-----------GCC-CgCGGGU------GUGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 130188 | 0.66 | 0.553284 |
Target: 5'- gCCGGUUCaagGGGCGCUgugaCGCGuCGGCaUGCg -3' miRNA: 3'- gGGUCGAG---CCCGCGG----GUGU-GCCG-GCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 66614 | 0.66 | 0.553284 |
Target: 5'- aUCCGGa---GGCGCCCAaACaGCCGCu -3' miRNA: 3'- -GGGUCgagcCCGCGGGUgUGcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 101916 | 0.66 | 0.553284 |
Target: 5'- gCCCcGCcUGGGCGUCaagaCACAgGGCgGCc -3' miRNA: 3'- -GGGuCGaGCCCGCGG----GUGUgCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 103799 | 0.66 | 0.553284 |
Target: 5'- cCCCGGg-C-GGCGCCgC-CGCGGCgGCg -3' miRNA: 3'- -GGGUCgaGcCCGCGG-GuGUGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 136683 | 0.66 | 0.553284 |
Target: 5'- aCCAGCcguUgGGGCuGCagaCCGCG-GGCCGCc -3' miRNA: 3'- gGGUCG---AgCCCG-CG---GGUGUgCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 151534 | 0.66 | 0.553284 |
Target: 5'- -aCGGCgccCGuGG-GCCCGgGCGGCCGg -3' miRNA: 3'- ggGUCGa--GC-CCgCGGGUgUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 113553 | 0.66 | 0.550463 |
Target: 5'- gCCCGGCUCGuGGUccagugcaucaccaGCUacuggaacaaCACGCGGUgCGCg -3' miRNA: 3'- -GGGUCGAGC-CCG--------------CGG----------GUGUGCCG-GCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 22849 | 0.66 | 0.543899 |
Target: 5'- gCCgagGGCuUCGacGGCGaCCugGCGGCCGUc -3' miRNA: 3'- gGG---UCG-AGC--CCGCgGGugUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 67865 | 0.66 | 0.543899 |
Target: 5'- aCCCAcGCcgucCGGGCuGCCCGCACauCCGg -3' miRNA: 3'- -GGGU-CGa---GCCCG-CGGGUGUGccGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 3446 | 0.66 | 0.543899 |
Target: 5'- gCCAGgcaCUCGa-CGgCCACGCGGCCGg -3' miRNA: 3'- gGGUC---GAGCccGCgGGUGUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 73111 | 0.66 | 0.543899 |
Target: 5'- aCCCGGC-CGGGCcgccggucGCCgAgGCGGgCGa -3' miRNA: 3'- -GGGUCGaGCCCG--------CGGgUgUGCCgGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 128067 | 0.66 | 0.543899 |
Target: 5'- cCCCAGg-UGGGgGCCCaccaACACGcGCaCGUa -3' miRNA: 3'- -GGGUCgaGCCCgCGGG----UGUGC-CG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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