miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 82533 0.67 0.51608
Target:  5'- gCCCAGUccCGccauGGCGCCCGCgAUGGgaGCg -3'
miRNA:   3'- -GGGUCGa-GC----CCGCGGGUG-UGCCggCG- -5'
5777 5' -64.1 NC_001806.1 + 108524 0.67 0.51608
Target:  5'- aUCCAGgUacccGGCgGCCCGCGugcggcUGGCCGCg -3'
miRNA:   3'- -GGGUCgAgc--CCG-CGGGUGU------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 132648 0.67 0.506932
Target:  5'- aCCUGGUgcgCGGG-GCC---GCGGCCGCu -3'
miRNA:   3'- -GGGUCGa--GCCCgCGGgugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 3670 0.67 0.506932
Target:  5'- gCCGGCgccgGGGCuCCC-CGCGGCCc- -3'
miRNA:   3'- gGGUCGag--CCCGcGGGuGUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 27253 0.67 0.506932
Target:  5'- gCCGcCUCGGGgGCgggacuggCCAaucgGCGGCCGCc -3'
miRNA:   3'- gGGUcGAGCCCgCG--------GGUg---UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 1780 0.67 0.506932
Target:  5'- aCCGGCgugucCGGGCcgaagcgcguGCgCACGCGGUagCGCa -3'
miRNA:   3'- gGGUCGa----GCCCG----------CGgGUGUGCCG--GCG- -5'
5777 5' -64.1 NC_001806.1 + 50225 0.67 0.506932
Target:  5'- aCC-GCgacugucgCGuGGcCGCCCGCuaugcCGGCCGCa -3'
miRNA:   3'- gGGuCGa-------GC-CC-GCGGGUGu----GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 66428 0.67 0.506932
Target:  5'- -gCGGUg-GGGCGCCCccGCAggucCGGCUGCc -3'
miRNA:   3'- ggGUCGagCCCGCGGG--UGU----GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 88359 0.67 0.506932
Target:  5'- uCCCgaaGGCcaUCGGGgcCGCCgGCugGGCUaGCg -3'
miRNA:   3'- -GGG---UCG--AGCCC--GCGGgUGugCCGG-CG- -5'
5777 5' -64.1 NC_001806.1 + 151042 0.67 0.506932
Target:  5'- aCCCGGacgUgGGGCGagaagcgcaCCCGCGCgggGGUCGCg -3'
miRNA:   3'- -GGGUCg--AgCCCGC---------GGGUGUG---CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 129415 0.67 0.505111
Target:  5'- gCCAGCUCuauuCGCCaacgaugcagcaACugGGCCGCg -3'
miRNA:   3'- gGGUCGAGccc-GCGGg-----------UGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 74484 0.67 0.497855
Target:  5'- gCCgCAGCUCGGGUcugGCCgaGCuGCGG-CGCu -3'
miRNA:   3'- -GG-GUCGAGCCCG---CGGg-UG-UGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 139956 0.67 0.497855
Target:  5'- aCCagaAGCUCgaacgcggguGGGaCGCCCAUAUGuaCGCg -3'
miRNA:   3'- -GGg--UCGAG----------CCC-GCGGGUGUGCcgGCG- -5'
5777 5' -64.1 NC_001806.1 + 141583 0.67 0.497855
Target:  5'- uCCguGcCUCGGGauaacaGuUCUugACGGCCGCc -3'
miRNA:   3'- -GGguC-GAGCCCg-----C-GGGugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 144811 0.67 0.497855
Target:  5'- gCCCGGgaCGaGGgGCCCccgacCGCGGCgGUc -3'
miRNA:   3'- -GGGUCgaGC-CCgCGGGu----GUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 146849 0.67 0.497855
Target:  5'- cUCCAGC-CGGGgaccgcgGCCCGCAgccgGGUCGCc -3'
miRNA:   3'- -GGGUCGaGCCCg------CGGGUGUg---CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 4742 0.67 0.497855
Target:  5'- cCCgGGC-CGGG-GCCCggucgccggcgGCGuCGGCUGCg -3'
miRNA:   3'- -GGgUCGaGCCCgCGGG-----------UGU-GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 26414 0.67 0.497855
Target:  5'- cCCCGGC-CGcccGgGCCCACGgGcGCCGUc -3'
miRNA:   3'- -GGGUCGaGCc--CgCGGGUGUgC-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 75582 0.67 0.497855
Target:  5'- cCCCAGCg-GGcGCGCCCuGCAgGaGCUGg -3'
miRNA:   3'- -GGGUCGagCC-CGCGGG-UGUgC-CGGCg -5'
5777 5' -64.1 NC_001806.1 + 32992 0.67 0.497855
Target:  5'- cCCgGGC-CGGGC-CgCCACGggggcCGGCCGUu -3'
miRNA:   3'- -GGgUCGaGCCCGcG-GGUGU-----GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.