Results 101 - 120 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5777 | 5' | -64.1 | NC_001806.1 | + | 75582 | 0.67 | 0.497855 |
Target: 5'- cCCCAGCg-GGcGCGCCCuGCAgGaGCUGg -3' miRNA: 3'- -GGGUCGagCC-CGCGGG-UGUgC-CGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 90997 | 0.67 | 0.497855 |
Target: 5'- aCCCcGCggggCGGGCGCgaCG-GCGGCgGCa -3' miRNA: 3'- -GGGuCGa---GCCCGCGg-GUgUGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 109034 | 0.67 | 0.496951 |
Target: 5'- gCUAGCUUuuggaggGGGCucagGCCCaACGCGGCCcCg -3' miRNA: 3'- gGGUCGAG-------CCCG----CGGG-UGUGCCGGcG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 1564 | 0.67 | 0.496951 |
Target: 5'- gCCgGGC-CGGcgcgcaccgccucGCGCCCcagcgccacguACACGGgCCGCa -3' miRNA: 3'- -GGgUCGaGCC-------------CGCGGG-----------UGUGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 69691 | 0.67 | 0.496951 |
Target: 5'- gCCuGCggCGGGCGCUCgugggggaguuugAgACGGCCGa -3' miRNA: 3'- gGGuCGa-GCCCGCGGG-------------UgUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 86011 | 0.67 | 0.48885 |
Target: 5'- uCCCGG---GGGCGCUUggccggggaggGCAgGGCCGCg -3' miRNA: 3'- -GGGUCgagCCCGCGGG-----------UGUgCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 30381 | 0.67 | 0.48885 |
Target: 5'- uCUguGC-CGGGCGCgUGCgACGGUgGCg -3' miRNA: 3'- -GGguCGaGCCCGCGgGUG-UGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 92934 | 0.68 | 0.479923 |
Target: 5'- gCCUggaGGC-CGGG-GCCCGCGCGcugauggacGCCGUg -3' miRNA: 3'- -GGG---UCGaGCCCgCGGGUGUGC---------CGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 100733 | 0.68 | 0.479923 |
Target: 5'- cUCCAcGC-CGGGCGCCCAggUGCGcCCGg -3' miRNA: 3'- -GGGU-CGaGCCCGCGGGU--GUGCcGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 74916 | 0.68 | 0.479923 |
Target: 5'- cCCCGaggccGUUCgggGGGCGCCCccugagguUACGGCgGCg -3' miRNA: 3'- -GGGU-----CGAG---CCCGCGGGu-------GUGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 60453 | 0.68 | 0.477261 |
Target: 5'- aCCAGCUCGcGCuccacggaaaccagGCCCccucugccGC-CGGCCGCc -3' miRNA: 3'- gGGUCGAGCcCG--------------CGGG--------UGuGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 109863 | 0.68 | 0.477261 |
Target: 5'- --gAGCUCGcuucguacauaguuGGCGaCCACGCGGUCGUc -3' miRNA: 3'- gggUCGAGC--------------CCGCgGGUGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 32960 | 0.68 | 0.471077 |
Target: 5'- cCCgGGC-CGGG-GCCCcUugGGuCCGCc -3' miRNA: 3'- -GGgUCGaGCCCgCGGGuGugCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 100104 | 0.68 | 0.471077 |
Target: 5'- cCCgCGGC-CGGcugacCGCCCGCcugGCGGuCCGCg -3' miRNA: 3'- -GG-GUCGaGCCc----GCGGGUG---UGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 105678 | 0.68 | 0.471077 |
Target: 5'- cCCCaAGUUCGGGUGaaggCC-CAgGGCuCGCa -3' miRNA: 3'- -GGG-UCGAGCCCGCg---GGuGUgCCG-GCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 122779 | 0.68 | 0.471077 |
Target: 5'- aCCAaCUCGGGgGCCaggaauuccaGCuuGGCCGUg -3' miRNA: 3'- gGGUcGAGCCCgCGGg---------UGugCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 24634 | 0.68 | 0.471077 |
Target: 5'- --gGGCcUGGGCGCgCCGCuGCGGcCCGUg -3' miRNA: 3'- gggUCGaGCCCGCG-GGUG-UGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 27335 | 0.68 | 0.471077 |
Target: 5'- gCCCGGCccaUUGGGCgggaguuaccGCCCAauggGCcgGGCCGCc -3' miRNA: 3'- -GGGUCG---AGCCCG----------CGGGUg---UG--CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 50666 | 0.68 | 0.471077 |
Target: 5'- aCCGGCgccgggacgaCGcGGCGgCCACGCgcgccauucuGGCCGCc -3' miRNA: 3'- gGGUCGa---------GC-CCGCgGGUGUG----------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 47203 | 0.68 | 0.471077 |
Target: 5'- gCCCGGC-CGGGgGUCCcaaaaACAcccCGGCgGCc -3' miRNA: 3'- -GGGUCGaGCCCgCGGG-----UGU---GCCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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