miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 20164 0.68 0.44505
Target:  5'- cCCCGccGCcCGGGCccGCCCcCGgGGCCGg -3'
miRNA:   3'- -GGGU--CGaGCCCG--CGGGuGUgCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 20290 0.68 0.461442
Target:  5'- aCCCGGCggccccgcccccUUGGGgcgguccCGCCCGC-CGGCCa- -3'
miRNA:   3'- -GGGUCG------------AGCCC-------GCGGGUGuGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 20342 0.72 0.258037
Target:  5'- -gCGGCaaggCGGGCgGCCC-UugGGCCGCc -3'
miRNA:   3'- ggGUCGa---GCCCG-CGGGuGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 20385 0.68 0.462314
Target:  5'- uCCCGGCguccggCGGGCgggaccgggggGCCCGgggACGGCCa- -3'
miRNA:   3'- -GGGUCGa-----GCCCG-----------CGGGUg--UGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 21136 0.78 0.112686
Target:  5'- cCCCGGCUCcccGGGC-CCCACcgACGGgCCGCc -3'
miRNA:   3'- -GGGUCGAG---CCCGcGGGUG--UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 21284 0.71 0.314503
Target:  5'- gCCCGGCgggaCGGGaggGCCCcCGCGGCgGg -3'
miRNA:   3'- -GGGUCGa---GCCCg--CGGGuGUGCCGgCg -5'
5777 5' -64.1 NC_001806.1 + 21500 0.73 0.230406
Target:  5'- gCCGGCgacCGGGC-CCCGgccCGgGGCCGCg -3'
miRNA:   3'- gGGUCGa--GCCCGcGGGU---GUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 21539 0.66 0.591248
Target:  5'- gCCCcGCUaCGcGGCGCguauccggaCCcCACGGaCCGCc -3'
miRNA:   3'- -GGGuCGA-GC-CCGCG---------GGuGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 21596 0.7 0.349707
Target:  5'- gCCCAGCcgccgCGGaGaCGUCguCACGGCCGg -3'
miRNA:   3'- -GGGUCGa----GCC-C-GCGGguGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 21856 0.67 0.51608
Target:  5'- gCCCaAGCccCGGGCGgcggcgaggaCCCcCGCGGCCuccGCg -3'
miRNA:   3'- -GGG-UCGa-GCCCGC----------GGGuGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 21935 0.67 0.51608
Target:  5'- gCCGGCcgcgacgccaCGGGC-CCUuCACGGCCGg -3'
miRNA:   3'- gGGUCGa---------GCCCGcGGGuGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 22059 0.7 0.348976
Target:  5'- gCCCGGCgcCGGGCcCCCGCccccgggGCGGgUGCu -3'
miRNA:   3'- -GGGUCGa-GCCCGcGGGUG-------UGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 22118 0.67 0.534567
Target:  5'- gCCCGGgcCUCugggGGGCGCCCGagGCGGaggaggCGCg -3'
miRNA:   3'- -GGGUC--GAG----CCCGCGGGUg-UGCCg-----GCG- -5'
5777 5' -64.1 NC_001806.1 + 22160 0.8 0.073799
Target:  5'- gCCGGUucgaggccUCGGGCGCCCcgGCGGCCGUg -3'
miRNA:   3'- gGGUCG--------AGCCCGCGGGugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 22200 0.67 0.518837
Target:  5'- gCCCgAGCUgGGcgacgccGCGCagcaguacgcccugaUCACGCGGCUGCu -3'
miRNA:   3'- -GGG-UCGAgCC-------CGCG---------------GGUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 22333 0.68 0.453637
Target:  5'- uUCCGGauCUCGGGCGCCgCGCGCaacaGCaGCu -3'
miRNA:   3'- -GGGUC--GAGCCCGCGG-GUGUGc---CGgCG- -5'
5777 5' -64.1 NC_001806.1 + 22432 0.73 0.220071
Target:  5'- uUCGGCUgGGGCcugGCgCACGCGGCgGCc -3'
miRNA:   3'- gGGUCGAgCCCG---CGgGUGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 22635 0.69 0.419848
Target:  5'- aCCgGGCgagcgCGcGGUGCCCGCcggguACGgcGCCGCg -3'
miRNA:   3'- -GGgUCGa----GC-CCGCGGGUG-----UGC--CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 22774 0.7 0.328255
Target:  5'- gCCgGGCgcc-GCGCCCAgGcCGGCCGCg -3'
miRNA:   3'- -GGgUCGagccCGCGGGUgU-GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 22849 0.66 0.543899
Target:  5'- gCCgagGGCuUCGacGGCGaCCugGCGGCCGUc -3'
miRNA:   3'- gGG---UCG-AGC--CCGCgGGugUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.