miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 22887 0.67 0.522522
Target:  5'- gCUGGC-CGGG-GCCCGgcccgccagcccccCGCGGCCGg -3'
miRNA:   3'- gGGUCGaGCCCgCGGGU--------------GUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 23106 0.69 0.403534
Target:  5'- gCCggGGCccUGGGC-CCCGCGCuGCCGCg -3'
miRNA:   3'- gGG--UCGa-GCCCGcGGGUGUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23223 0.7 0.357076
Target:  5'- gCCAGCgcacCGGaCGCCgccgacgcgCugGCGGCCGCc -3'
miRNA:   3'- gGGUCGa---GCCcGCGG---------GugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23308 0.71 0.288319
Target:  5'- gCCCGGCcCGGcCGCCCGgagGCGGCgGCc -3'
miRNA:   3'- -GGGUCGaGCCcGCGGGUg--UGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 23375 0.78 0.104649
Target:  5'- cCCCGGCUCGGaCGCCCGCGCcccccuccCCGCg -3'
miRNA:   3'- -GGGUCGAGCCcGCGGGUGUGcc------GGCG- -5'
5777 5' -64.1 NC_001806.1 + 23451 0.79 0.09477
Target:  5'- gCCCAGCcCGcGGCGCCC-CG-GGCCGCc -3'
miRNA:   3'- -GGGUCGaGC-CCGCGGGuGUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23475 0.67 0.534567
Target:  5'- nCCgCGGCgCaGGCccGCCCGCGCcccguGGCCGUg -3'
miRNA:   3'- -GG-GUCGaGcCCG--CGGGUGUG-----CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23570 0.76 0.143816
Target:  5'- gCCCAGCcacaCGgcGGCGCCC--GCGGCCGCc -3'
miRNA:   3'- -GGGUCGa---GC--CCGCGGGugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23823 0.7 0.364553
Target:  5'- cCCCuGCgcgccUCGGGCccgcuGCgCCGCAUGGCgGCc -3'
miRNA:   3'- -GGGuCG-----AGCCCG-----CG-GGUGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 23937 0.66 0.562716
Target:  5'- gCCGGCggCGGG-GCCUgggGgGGCCGCc -3'
miRNA:   3'- gGGUCGa-GCCCgCGGGug-UgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 24018 0.73 0.225188
Target:  5'- aCCGGCUgugCGGGC-CggACACGGCCGCc -3'
miRNA:   3'- gGGUCGA---GCCCGcGggUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 24304 0.7 0.341727
Target:  5'- gCCGGCggcgCGGGaccuGCgCCGCACggugcuggccucgGGCCGCg -3'
miRNA:   3'- gGGUCGa---GCCCg---CG-GGUGUG-------------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 24353 0.66 0.561771
Target:  5'- uUCGGCcCGGGgGUCUucGCGCgcguggaGGCCGCg -3'
miRNA:   3'- gGGUCGaGCCCgCGGG--UGUG-------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 24634 0.68 0.471077
Target:  5'- --gGGCcUGGGCGCgCCGCuGCGGcCCGUg -3'
miRNA:   3'- gggUCGaGCCCGCG-GGUG-UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 25865 0.71 0.321325
Target:  5'- -gCAGCcCGGGCcCCC-CGCGGgCGCg -3'
miRNA:   3'- ggGUCGaGCCCGcGGGuGUGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 26263 0.73 0.246672
Target:  5'- -gCAGCcCGGGCcCCC-CGCGGCCGa -3'
miRNA:   3'- ggGUCGaGCCCGcGGGuGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 26414 0.67 0.497855
Target:  5'- cCCCGGC-CGcccGgGCCCACGgGcGCCGUc -3'
miRNA:   3'- -GGGUCGaGCc--CgCGGGUGUgC-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 26473 0.73 0.232521
Target:  5'- gCCCAaCUCGGaacccgcggucaggaGCGCgCC-CGCGGCCGCc -3'
miRNA:   3'- -GGGUcGAGCC---------------CGCG-GGuGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 26921 0.71 0.308459
Target:  5'- cCCCAcGUcCGGGUGCgCCACcuggugucugggccuCGGCCGCc -3'
miRNA:   3'- -GGGU-CGaGCCCGCG-GGUGu--------------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 26975 0.71 0.307793
Target:  5'- gCCgCGGCUCGuGG-GCCCGCGagcgGGCCGa -3'
miRNA:   3'- -GG-GUCGAGC-CCgCGGGUGUg---CCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.