miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 27073 0.69 0.387627
Target:  5'- gCCCGuGCcCGGGCccugGCCCGCGgagcCGGCCcgGCg -3'
miRNA:   3'- -GGGU-CGaGCCCG----CGGGUGU----GCCGG--CG- -5'
5777 5' -64.1 NC_001806.1 + 27253 0.67 0.506932
Target:  5'- gCCGcCUCGGGgGCgggacuggCCAaucgGCGGCCGCc -3'
miRNA:   3'- gGGUcGAGCCCgCG--------GGUg---UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 27335 0.68 0.471077
Target:  5'- gCCCGGCccaUUGGGCgggaguuaccGCCCAauggGCcgGGCCGCc -3'
miRNA:   3'- -GGGUCG---AGCCCG----------CGGGUg---UG--CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 28169 0.72 0.272236
Target:  5'- cCCCAGCgcgaggugaggggcCGGGCGCCauguCugGGgCGCc -3'
miRNA:   3'- -GGGUCGa-------------GCCCGCGGgu--GugCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 29855 0.72 0.284542
Target:  5'- gCCgCGGCUCGGacagcgccccccucgGCGCCCaucgggccACACGGCaGCa -3'
miRNA:   3'- -GG-GUCGAGCC---------------CGCGGG--------UGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 30174 0.73 0.220071
Target:  5'- cCCCcGCccCGGGCccCCCGCguccGCGGCCGCg -3'
miRNA:   3'- -GGGuCGa-GCCCGc-GGGUG----UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 30207 0.67 0.497855
Target:  5'- gUCgGGaCcCGcGCGCCCccGCGCGGCCGUg -3'
miRNA:   3'- -GGgUC-GaGCcCGCGGG--UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 30281 0.69 0.41164
Target:  5'- cCCCGGCcccCGGGgcggagccggcCGCCCGCcccGCGGaCGCg -3'
miRNA:   3'- -GGGUCGa--GCCC-----------GCGGGUG---UGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 30381 0.67 0.48885
Target:  5'- uCUguGC-CGGGCGCgUGCgACGGUgGCg -3'
miRNA:   3'- -GGguCGaGCCCGCGgGUG-UGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 30950 0.68 0.428153
Target:  5'- gCCCAuCUCGGGgGUCUcuaGCGUGGUCGCc -3'
miRNA:   3'- -GGGUcGAGCCCgCGGG---UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 31095 0.73 0.220071
Target:  5'- aCCCGGCUgCGGGCcgcgGUCCccgGCugGaGCCGCc -3'
miRNA:   3'- -GGGUCGA-GCCCG----CGGG---UGugC-CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 31255 0.66 0.562716
Target:  5'- cCCUAGU--GGGCGCCCugGacuuCCGCa -3'
miRNA:   3'- -GGGUCGagCCCGCGGGugUgcc-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 32960 0.68 0.471077
Target:  5'- cCCgGGC-CGGG-GCCCcUugGGuCCGCc -3'
miRNA:   3'- -GGgUCGaGCCCgCGGGuGugCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 32992 0.67 0.497855
Target:  5'- cCCgGGC-CGGGC-CgCCACGggggcCGGCCGUu -3'
miRNA:   3'- -GGgUCGaGCCCGcG-GGUGU-----GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 33104 0.71 0.294701
Target:  5'- gCCGGCgagCGGGUccggacgggGCCCGgACcGCCGCg -3'
miRNA:   3'- gGGUCGa--GCCCG---------CGGGUgUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 33354 0.7 0.349707
Target:  5'- cCCCGGCUgcagGGGgGCCCGgAgaGCCGCg -3'
miRNA:   3'- -GGGUCGAg---CCCgCGGGUgUgcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 33615 0.69 0.37983
Target:  5'- aCCGGCgcgGGGCGgggggccggauaCCCACACGGgCGg -3'
miRNA:   3'- gGGUCGag-CCCGC------------GGGUGUGCCgGCg -5'
5777 5' -64.1 NC_001806.1 + 33743 0.73 0.246672
Target:  5'- gCCGGCUCuGcGGUGUCgGCgGCGGCUGCg -3'
miRNA:   3'- gGGUCGAG-C-CCGCGGgUG-UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 34855 0.66 0.581704
Target:  5'- cCCCAGCgUCGGGUG-UCACGgGGaaagaGCa -3'
miRNA:   3'- -GGGUCG-AGCCCGCgGGUGUgCCgg---CG- -5'
5777 5' -64.1 NC_001806.1 + 35545 0.72 0.257459
Target:  5'- gCCCAgcgagccGCUCGGcGCGCCCG-GCG-CCGCg -3'
miRNA:   3'- -GGGU-------CGAGCC-CGCGGGUgUGCcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.