miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 37763 0.69 0.37983
Target:  5'- gUCGGCggCGGGCGCCUuucgcucCGgGGCCGg -3'
miRNA:   3'- gGGUCGa-GCCCGCGGGu------GUgCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 37880 0.67 0.525293
Target:  5'- uCCgGGUgggUCGGGCuGCUCACu--GCCGCg -3'
miRNA:   3'- -GGgUCG---AGCCCG-CGGGUGugcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 38408 0.66 0.581704
Target:  5'- gCCGGCUCGGGgggguccuCGUCCAgAUcGCUGUc -3'
miRNA:   3'- gGGUCGAGCCC--------GCGGGUgUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 41164 0.7 0.335297
Target:  5'- ---uGCgUCGGG-GUCCACGCGGgCCGCg -3'
miRNA:   3'- ggguCG-AGCCCgCGGGUGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 41561 0.66 0.591248
Target:  5'- aUCCGGUagaCGGGCaggggaGUCUGCACcGCCGCa -3'
miRNA:   3'- -GGGUCGa--GCCCG------CGGGUGUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 41718 0.7 0.364553
Target:  5'- cCCCGGgacuggCGGGCGCaaACGCGGgccacCCGCg -3'
miRNA:   3'- -GGGUCga----GCCCGCGggUGUGCC-----GGCG- -5'
5777 5' -64.1 NC_001806.1 + 42770 0.67 0.51608
Target:  5'- uCCCGuGCgccaGGGCGUCCuguaGCGCGGCgaCGUc -3'
miRNA:   3'- -GGGU-CGag--CCCGCGGG----UGUGCCG--GCG- -5'
5777 5' -64.1 NC_001806.1 + 43303 0.68 0.462314
Target:  5'- gCCgCGGCUgCaGGagGCCCugGCGGUCGUu -3'
miRNA:   3'- -GG-GUCGA-GcCCg-CGGGugUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 43475 0.68 0.428153
Target:  5'- cCCgGGUUCGaGGCcCCCACGaucgacggGGCCGUg -3'
miRNA:   3'- -GGgUCGAGC-CCGcGGGUGUg-------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 45279 0.69 0.403534
Target:  5'- cCUUAGCggCGGGagacgcggGCCCGCGCGgggaGCCGCc -3'
miRNA:   3'- -GGGUCGa-GCCCg-------CGGGUGUGC----CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 46103 0.76 0.150921
Target:  5'- gUCCGGCcCGGG-GCCUGCGCGGgCGCc -3'
miRNA:   3'- -GGGUCGaGCCCgCGGGUGUGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 46194 0.69 0.419022
Target:  5'- aCCCAGCggGuGGCgacuaagGCCCcCGCGGCCccgGCg -3'
miRNA:   3'- -GGGUCGagC-CCG-------CGGGuGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 46431 0.71 0.301192
Target:  5'- gCCGcGgUCGGGCG-CCugGCGGCCauGCa -3'
miRNA:   3'- gGGU-CgAGCCCGCgGGugUGCCGG--CG- -5'
5777 5' -64.1 NC_001806.1 + 47044 0.69 0.403534
Target:  5'- uCCCGcGCcgUCGGGCGuCCCACACucucugGGCgGg -3'
miRNA:   3'- -GGGU-CG--AGCCCGC-GGGUGUG------CCGgCg -5'
5777 5' -64.1 NC_001806.1 + 47203 0.68 0.471077
Target:  5'- gCCCGGC-CGGGgGUCCcaaaaACAcccCGGCgGCc -3'
miRNA:   3'- -GGGUCGaGCCCgCGGG-----UGU---GCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 49358 0.69 0.386843
Target:  5'- uCCCGGCagcgcccCGGGCccgaugcgGCCCguagccagucgguGCGCGGUCGCc -3'
miRNA:   3'- -GGGUCGa------GCCCG--------CGGG-------------UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 50225 0.67 0.506932
Target:  5'- aCC-GCgacugucgCGuGGcCGCCCGCuaugcCGGCCGCa -3'
miRNA:   3'- gGGuCGa-------GC-CC-GCGGGUGu----GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 50485 0.66 0.581704
Target:  5'- gCCCuGCcccUGGGaaGCCC-CGCGGUCGUg -3'
miRNA:   3'- -GGGuCGa--GCCCg-CGGGuGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 50581 0.7 0.352642
Target:  5'- gCCguGCU-GGGCGCUgcgguguacgcgcugCACACGGCCcugGCg -3'
miRNA:   3'- -GGguCGAgCCCGCGG---------------GUGUGCCGG---CG- -5'
5777 5' -64.1 NC_001806.1 + 50666 0.68 0.471077
Target:  5'- aCCGGCgccgggacgaCGcGGCGgCCACGCgcgccauucuGGCCGCc -3'
miRNA:   3'- gGGUCGa---------GC-CCGCgGGUGUG----------CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.