miRNA display CGI


Results 121 - 140 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 50877 0.79 0.085778
Target:  5'- cCCCgccaAGUUCuGGGCGgacUCCGCGCGGCCGCg -3'
miRNA:   3'- -GGG----UCGAG-CCCGC---GGGUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 51017 0.66 0.553284
Target:  5'- cCCCguaAGCggCGGGUccguguuggGCCCGCG-GGuCCGCg -3'
miRNA:   3'- -GGG---UCGa-GCCCG---------CGGGUGUgCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 51386 0.71 0.294701
Target:  5'- cCCCGGag-GGGCuCCUuaGCGCGGCCGUg -3'
miRNA:   3'- -GGGUCgagCCCGcGGG--UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 52030 0.66 0.571242
Target:  5'- uCCC-GCUCGGcggcagcccggagGCGCCCGCggaaACGuuCGCg -3'
miRNA:   3'- -GGGuCGAGCC-------------CGCGGGUG----UGCcgGCG- -5'
5777 5' -64.1 NC_001806.1 + 52449 0.69 0.41164
Target:  5'- gCUUGGUUCGGGgcCGCCC---UGGCCGCg -3'
miRNA:   3'- -GGGUCGAGCCC--GCGGGuguGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 52523 0.66 0.572191
Target:  5'- -gCGGCUCGuGGCGUCUcgccggacgACGUGGuCCGCg -3'
miRNA:   3'- ggGUCGAGC-CCGCGGG---------UGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 54624 0.66 0.562716
Target:  5'- gCCAGCcCgGGGUGgUCGCACgacuccugGGCCGUa -3'
miRNA:   3'- gGGUCGaG-CCCGCgGGUGUG--------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 56532 0.66 0.580751
Target:  5'- gCCCGGCguucccCGGGCauguucucgcaccGUCUugACGGCaagCGCg -3'
miRNA:   3'- -GGGUCGa-----GCCCG-------------CGGGugUGCCG---GCG- -5'
5777 5' -64.1 NC_001806.1 + 56586 0.66 0.541094
Target:  5'- cCCCAGaaaggugaccaCGGGCaCCCAgACguuuucgGGCCGCg -3'
miRNA:   3'- -GGGUCga---------GCCCGcGGGUgUG-------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 57059 0.69 0.401121
Target:  5'- cCCCGGCUgcgugcCGGGCuCCCcgagacuccacagaACAagGGCCGCu -3'
miRNA:   3'- -GGGUCGA------GCCCGcGGG--------------UGUg-CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 57117 0.68 0.462314
Target:  5'- gCCAGUUUGagccaGGCGUauauCCGCGCggugGGCCGCg -3'
miRNA:   3'- gGGUCGAGC-----CCGCG----GGUGUG----CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 57182 0.66 0.541094
Target:  5'- gCCCAGCaCGGcGCacccgacggcgaacGCCCcagACGCGGCauuCGCg -3'
miRNA:   3'- -GGGUCGaGCC-CG--------------CGGG---UGUGCCG---GCG- -5'
5777 5' -64.1 NC_001806.1 + 57302 0.68 0.462314
Target:  5'- cCCCcGCgccaGGGCcCCCACGCacgcgagguguGGCCGUc -3'
miRNA:   3'- -GGGuCGag--CCCGcGGGUGUG-----------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 58993 0.72 0.275882
Target:  5'- aCCUGGCa-GGGCGCCCcCuccucCGGCUGCc -3'
miRNA:   3'- -GGGUCGagCCCGCGGGuGu----GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 59493 0.7 0.357076
Target:  5'- --aGGCUCGGGUGuCCCGgACcGUCGCa -3'
miRNA:   3'- gggUCGAGCCCGC-GGGUgUGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 59948 0.69 0.386843
Target:  5'- aCCCAGCUCuGccuuuuccaacauGCGCCgGCGCGGCa-- -3'
miRNA:   3'- -GGGUCGAGcC-------------CGCGGgUGUGCCGgcg -5'
5777 5' -64.1 NC_001806.1 + 60453 0.68 0.477261
Target:  5'- aCCAGCUCGcGCuccacggaaaccagGCCCccucugccGC-CGGCCGCc -3'
miRNA:   3'- gGGUCGAGCcCG--------------CGGG--------UGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 62932 0.68 0.452774
Target:  5'- aCCgCGGC-CGGGCGUCCggaaaGCgcucccagugaaaGCGGCCGg -3'
miRNA:   3'- -GG-GUCGaGCCCGCGGG-----UG-------------UGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 64953 0.66 0.581704
Target:  5'- aCCGGCgUC-GGCGCCCG---GGCCGg -3'
miRNA:   3'- gGGUCG-AGcCCGCGGGUgugCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 65466 0.68 0.44505
Target:  5'- cCCCGGgUCcuggGGGCGCCCGCGCaccacgucuCCGUc -3'
miRNA:   3'- -GGGUCgAG----CCCGCGGGUGUGcc-------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.