miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 123750 0.7 0.342447
Target:  5'- cCCCacggGGCcucCGGGCGCCCcaGCGGCCc- -3'
miRNA:   3'- -GGG----UCGa--GCCCGCGGGugUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 123344 0.71 0.314503
Target:  5'- cCUCGGUUUGuuGGCGCCUuUAUGGCUGCa -3'
miRNA:   3'- -GGGUCGAGC--CCGCGGGuGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 123195 0.69 0.395529
Target:  5'- aCCCc-C-CGGGuCGCCCGCAgGGUgGCg -3'
miRNA:   3'- -GGGucGaGCCC-GCGGGUGUgCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 122779 0.68 0.471077
Target:  5'- aCCAaCUCGGGgGCCaggaauuccaGCuuGGCCGUg -3'
miRNA:   3'- gGGUcGAGCCCgCGGg---------UGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 120003 0.71 0.314503
Target:  5'- uCCCGcGCUCGaGGUGCCCcuGCGCcacCCGCg -3'
miRNA:   3'- -GGGU-CGAGC-CCGCGGG--UGUGcc-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 119549 0.68 0.453637
Target:  5'- gUCAGCggGGGCGCCauggGgGCGGCUGa -3'
miRNA:   3'- gGGUCGagCCCGCGGg---UgUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 119285 0.72 0.263879
Target:  5'- cCCCAcGCggGGGCGCCCGCAgacCCGCc -3'
miRNA:   3'- -GGGU-CGagCCCGCGGGUGUgccGGCG- -5'
5777 5' -64.1 NC_001806.1 + 119180 0.69 0.387627
Target:  5'- gCUCuGCUUGGcGCcgccgcCCCGC-CGGCCGCg -3'
miRNA:   3'- -GGGuCGAGCC-CGc-----GGGUGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 118786 0.69 0.403534
Target:  5'- cCCCGGaCUCGGGaCGgCCGCAaacuuccaGGUCGa -3'
miRNA:   3'- -GGGUC-GAGCCC-GCgGGUGUg-------CCGGCg -5'
5777 5' -64.1 NC_001806.1 + 118741 0.74 0.186975
Target:  5'- gCCUGGCggccgCGGGaauccccuggcCGCCCugauGCGCGGCCGCc -3'
miRNA:   3'- -GGGUCGa----GCCC-----------GCGGG----UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 118593 0.66 0.581704
Target:  5'- cCCgCGGaCUCGGGgGaCCCGCAUcGCCu- -3'
miRNA:   3'- -GG-GUC-GAGCCCgC-GGGUGUGcCGGcg -5'
5777 5' -64.1 NC_001806.1 + 117689 0.7 0.372138
Target:  5'- --aAGCUCGGGgcccgaGCCCGCGuCGGCCc- -3'
miRNA:   3'- gggUCGAGCCCg-----CGGGUGU-GCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 116969 0.73 0.225188
Target:  5'- uCCCguGGUUCGGGUGUgCACcuuugacggcGCGGCCGUu -3'
miRNA:   3'- -GGG--UCGAGCCCGCGgGUG----------UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 115107 0.76 0.150921
Target:  5'- cCCCGuGUUCGGguGCGCCCAggugcCGCGGCgCGCa -3'
miRNA:   3'- -GGGU-CGAGCC--CGCGGGU-----GUGCCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 114343 0.76 0.143816
Target:  5'- gCUCuGCUCGgcGGCGCCCgACGCGGgCGCc -3'
miRNA:   3'- -GGGuCGAGC--CCGCGGG-UGUGCCgGCG- -5'
5777 5' -64.1 NC_001806.1 + 113646 0.66 0.581704
Target:  5'- aCCUAcCUCGGGgGagaCCuucccgaggaguGCAUGGCCGUg -3'
miRNA:   3'- -GGGUcGAGCCCgCg--GG------------UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 113553 0.66 0.550463
Target:  5'- gCCCGGCUCGuGGUccagugcaucaccaGCUacuggaacaaCACGCGGUgCGCg -3'
miRNA:   3'- -GGGUCGAGC-CCG--------------CGG----------GUGUGCCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 112676 0.68 0.462314
Target:  5'- aCgAGCUCGaGaGCGCCCcccagacgacGCGCGuGCgCGCg -3'
miRNA:   3'- gGgUCGAGC-C-CGCGGG----------UGUGC-CG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 112357 0.66 0.562716
Target:  5'- gCCUGGCUCGuGGaC-CUCAcCACGGCCacGCa -3'
miRNA:   3'- -GGGUCGAGC-CC-GcGGGU-GUGCCGG--CG- -5'
5777 5' -64.1 NC_001806.1 + 111920 0.66 0.562716
Target:  5'- aCCAGC-CGcugauUGCCCGCgACGGcCCGCa -3'
miRNA:   3'- gGGUCGaGCcc---GCGGGUG-UGCC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.