miRNA display CGI


Results 61 - 80 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 111185 0.73 0.225188
Target:  5'- cCCCuGCgcacaCGGGCccuggggauaGCCUGCGCGGCCGg -3'
miRNA:   3'- -GGGuCGa----GCCCG----------CGGGUGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 109931 0.67 0.525293
Target:  5'- aCUUGGCaaucucccCGGGCuGCgaggCACACGGCCGCc -3'
miRNA:   3'- -GGGUCGa-------GCCCG-CGg---GUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 109863 0.68 0.477261
Target:  5'- --gAGCUCGcuucguacauaguuGGCGaCCACGCGGUCGUc -3'
miRNA:   3'- gggUCGAGC--------------CCGCgGGUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 109304 0.73 0.235725
Target:  5'- gCCGGCgaaacgccagCGGG-GCCCACGCGGUCa- -3'
miRNA:   3'- gGGUCGa---------GCCCgCGGGUGUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 109034 0.67 0.496951
Target:  5'- gCUAGCUUuuggaggGGGCucagGCCCaACGCGGCCcCg -3'
miRNA:   3'- gGGUCGAG-------CCCG----CGGG-UGUGCCGGcG- -5'
5777 5' -64.1 NC_001806.1 + 108524 0.67 0.51608
Target:  5'- aUCCAGgUacccGGCgGCCCGCGugcggcUGGCCGCg -3'
miRNA:   3'- -GGGUCgAgc--CCG-CGGGUGU------GCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 107027 0.79 0.090167
Target:  5'- gCCGGgUUGGcCGCCCGCGgGGCCGCg -3'
miRNA:   3'- gGGUCgAGCCcGCGGGUGUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 106898 0.66 0.572191
Target:  5'- cCCCcuCUCuucuGGCGCCUaACGgGGCUGCu -3'
miRNA:   3'- -GGGucGAGc---CCGCGGG-UGUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 106863 0.68 0.44505
Target:  5'- uCUCGGgggacgCGGGCGCCgaGCAgGGcCCGCg -3'
miRNA:   3'- -GGGUCga----GCCCGCGGg-UGUgCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 106690 0.68 0.471077
Target:  5'- cCCCgggGGCUcuuccCGGGCcCCCGgGCGGCCc- -3'
miRNA:   3'- -GGG---UCGA-----GCCCGcGGGUgUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 106532 0.66 0.572191
Target:  5'- gCUgguGCUCGGGUGCgaugCCGCGCuGGUgCGCg -3'
miRNA:   3'- gGGu--CGAGCCCGCG----GGUGUG-CCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 105678 0.68 0.471077
Target:  5'- cCCCaAGUUCGGGUGaaggCC-CAgGGCuCGCa -3'
miRNA:   3'- -GGG-UCGAGCCCGCg---GGuGUgCCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 103799 0.66 0.553284
Target:  5'- cCCCGGg-C-GGCGCCgC-CGCGGCgGCg -3'
miRNA:   3'- -GGGUCgaGcCCGCGG-GuGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 103119 0.75 0.182622
Target:  5'- --gAGCUCGGcCGCCUGCAUGGCgGCg -3'
miRNA:   3'- gggUCGAGCCcGCGGGUGUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 103041 0.66 0.591248
Target:  5'- cUCCAGCgccuccaGGGCGCCUgcgaucucguGCACGuuCCGUu -3'
miRNA:   3'- -GGGUCGag-----CCCGCGGG----------UGUGCc-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 102831 0.7 0.335297
Target:  5'- cCCCgacgAGC-CGGuCGCCC-CGCGGcCCGCg -3'
miRNA:   3'- -GGG----UCGaGCCcGCGGGuGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 102421 0.72 0.275882
Target:  5'- uCCguGUUCGuagcGGCcCCCGC-CGGCCGCg -3'
miRNA:   3'- -GGguCGAGC----CCGcGGGUGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 101916 0.66 0.553284
Target:  5'- gCCCcGCcUGGGCGUCaagaCACAgGGCgGCc -3'
miRNA:   3'- -GGGuCGaGCCCGCGG----GUGUgCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 101450 0.66 0.581704
Target:  5'- aCCCAGCUCccgccguuGCGUUCACGCcaaccgccgGGCCGg -3'
miRNA:   3'- -GGGUCGAGcc------CGCGGGUGUG---------CCGGCg -5'
5777 5' -64.1 NC_001806.1 + 100733 0.68 0.479923
Target:  5'- cUCCAcGC-CGGGCGCCCAggUGCGcCCGg -3'
miRNA:   3'- -GGGU-CGaGCCCGCGGGU--GUGCcGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.