miRNA display CGI


Results 81 - 100 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 100104 0.68 0.471077
Target:  5'- cCCgCGGC-CGGcugacCGCCCGCcugGCGGuCCGCg -3'
miRNA:   3'- -GG-GUCGaGCCc----GCGGGUG---UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 98134 0.69 0.403534
Target:  5'- aUCAGCUCGcGGCccgggGCCUGCuACaGCCGCc -3'
miRNA:   3'- gGGUCGAGC-CCG-----CGGGUG-UGcCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 96464 0.66 0.572191
Target:  5'- uCCgAGUUCccccGGCacGCCUgggguCGCGGCCGCg -3'
miRNA:   3'- -GGgUCGAGc---CCG--CGGGu----GUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 96369 0.68 0.428153
Target:  5'- gCCAuGCgccaGGGCGCCCccGCGCGGgggCGCc -3'
miRNA:   3'- gGGU-CGag--CCCGCGGG--UGUGCCg--GCG- -5'
5777 5' -64.1 NC_001806.1 + 95962 0.78 0.109945
Target:  5'- --gGGCUCGGGUGCUgAUugGGCCGUc -3'
miRNA:   3'- gggUCGAGCCCGCGGgUGugCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 95650 0.66 0.585518
Target:  5'- -aCGGCUuugCGGcgcgcgcgcgcuucuGCGCCCugACGGCgggCGCg -3'
miRNA:   3'- ggGUCGA---GCC---------------CGCGGGugUGCCG---GCG- -5'
5777 5' -64.1 NC_001806.1 + 94944 0.66 0.553284
Target:  5'- uUCUGGCUCGcguccGGCGaCCGCGCcGGCCa- -3'
miRNA:   3'- -GGGUCGAGC-----CCGCgGGUGUG-CCGGcg -5'
5777 5' -64.1 NC_001806.1 + 93978 0.66 0.572191
Target:  5'- cUCCGGCcgCGguacagaucGGCGCCgCGagAUGGCCGCc -3'
miRNA:   3'- -GGGUCGa-GC---------CCGCGG-GUg-UGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 93871 0.75 0.157965
Target:  5'- uCCCGGCuugccggUCGGcGgGCCCGCGggaGGCCGCc -3'
miRNA:   3'- -GGGUCG-------AGCC-CgCGGGUGUg--CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 93588 0.71 0.312479
Target:  5'- -gCGGCcCGGGgGCCCcgggaccggcauuuGC-CGGCCGCa -3'
miRNA:   3'- ggGUCGaGCCCgCGGG--------------UGuGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 93015 0.68 0.451051
Target:  5'- aCCuGCUgcggcccgucauggCGGcGCGCCC-CAUGGUCGUg -3'
miRNA:   3'- gGGuCGA--------------GCC-CGCGGGuGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 92934 0.68 0.479923
Target:  5'- gCCUggaGGC-CGGG-GCCCGCGCGcugauggacGCCGUg -3'
miRNA:   3'- -GGG---UCGaGCCCgCGGGUGUGC---------CGGCG- -5'
5777 5' -64.1 NC_001806.1 + 92887 0.68 0.44505
Target:  5'- cCCCAGCgugcaGGcuGCGgCCGCGUGGuCCGCg -3'
miRNA:   3'- -GGGUCGag---CC--CGCgGGUGUGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 92339 0.66 0.572191
Target:  5'- cCCCAGCcuaaCGGcCGgCCAgACGGCCc- -3'
miRNA:   3'- -GGGUCGa---GCCcGCgGGUgUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 91152 0.69 0.37983
Target:  5'- gCCGcuGUUCGaGG-GCCaggACACGGCCGCg -3'
miRNA:   3'- gGGU--CGAGC-CCgCGGg--UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 90997 0.67 0.497855
Target:  5'- aCCCcGCggggCGGGCGCgaCG-GCGGCgGCa -3'
miRNA:   3'- -GGGuCGa---GCCCGCGg-GUgUGCCGgCG- -5'
5777 5' -64.1 NC_001806.1 + 90884 0.66 0.562716
Target:  5'- aCguGgaCGccGUgGCCCGCGCGGCCGCc -3'
miRNA:   3'- gGguCgaGCc-CG-CGGGUGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 89580 0.68 0.462314
Target:  5'- gCCGGC-CGGGCuuauggaCCGCcgGCGGCCGa -3'
miRNA:   3'- gGGUCGaGCCCGcg-----GGUG--UGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 88359 0.67 0.506932
Target:  5'- uCCCgaaGGCcaUCGGGgcCGCCgGCugGGCUaGCg -3'
miRNA:   3'- -GGG---UCG--AGCCC--GCGGgUGugCCGG-CG- -5'
5777 5' -64.1 NC_001806.1 + 86800 0.68 0.428153
Target:  5'- gCCCAGCgcgCGuGGaCGUacuCGCGGUCGCg -3'
miRNA:   3'- -GGGUCGa--GC-CC-GCGgguGUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.