Results 81 - 100 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5777 | 5' | -64.1 | NC_001806.1 | + | 126906 | 0.66 | 0.558938 |
Target: 5'- aCCCAGCaa-GGCGUCCAUucucccgaaccaGGCCGUu -3' miRNA: 3'- -GGGUCGagcCCGCGGGUGug----------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 7031 | 0.66 | 0.557051 |
Target: 5'- cCCCAGUUgggcCGGGCGaCCCagauguuuacuuaaaAgGCGuGCCGUc -3' miRNA: 3'- -GGGUCGA----GCCCGC-GGG---------------UgUGC-CGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 151534 | 0.66 | 0.553284 |
Target: 5'- -aCGGCgccCGuGG-GCCCGgGCGGCCGg -3' miRNA: 3'- ggGUCGa--GC-CCgCGGGUgUGCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 136683 | 0.66 | 0.553284 |
Target: 5'- aCCAGCcguUgGGGCuGCagaCCGCG-GGCCGCc -3' miRNA: 3'- gGGUCG---AgCCCG-CG---GGUGUgCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 103799 | 0.66 | 0.553284 |
Target: 5'- cCCCGGg-C-GGCGCCgC-CGCGGCgGCg -3' miRNA: 3'- -GGGUCgaGcCCGCGG-GuGUGCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 101916 | 0.66 | 0.553284 |
Target: 5'- gCCCcGCcUGGGCGUCaagaCACAgGGCgGCc -3' miRNA: 3'- -GGGuCGaGCCCGCGG----GUGUgCCGgCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 66614 | 0.66 | 0.553284 |
Target: 5'- aUCCGGa---GGCGCCCAaACaGCCGCu -3' miRNA: 3'- -GGGUCgagcCCGCGGGUgUGcCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 4848 | 0.66 | 0.562716 |
Target: 5'- gUCgGGCgUCGGGauCGUCCGgACGGCCu- -3' miRNA: 3'- -GGgUCG-AGCCC--GCGGGUgUGCCGGcg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 23937 | 0.66 | 0.562716 |
Target: 5'- gCCGGCggCGGG-GCCUgggGgGGCCGCc -3' miRNA: 3'- gGGUCGa-GCCCgCGGGug-UgCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 54624 | 0.66 | 0.562716 |
Target: 5'- gCCAGCcCgGGGUGgUCGCACgacuccugGGCCGUa -3' miRNA: 3'- gGGUCGaG-CCCGCgGGUGUG--------CCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 52523 | 0.66 | 0.572191 |
Target: 5'- -gCGGCUCGuGGCGUCUcgccggacgACGUGGuCCGCg -3' miRNA: 3'- ggGUCGAGC-CCGCGGG---------UGUGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 52030 | 0.66 | 0.571242 |
Target: 5'- uCCC-GCUCGGcggcagcccggagGCGCCCGCggaaACGuuCGCg -3' miRNA: 3'- -GGGuCGAGCC-------------CGCGGGUG----UGCcgGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 4938 | 0.66 | 0.571242 |
Target: 5'- gCCGGCgUC-GGUGCCCGcCGCGGgggcccucccgucCCGCc -3' miRNA: 3'- gGGUCG-AGcCCGCGGGU-GUGCC-------------GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 90884 | 0.66 | 0.562716 |
Target: 5'- aCguGgaCGccGUgGCCCGCGCGGCCGCc -3' miRNA: 3'- gGguCgaGCc-CG-CGGGUGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 31255 | 0.66 | 0.562716 |
Target: 5'- cCCUAGU--GGGCGCCCugGacuuCCGCa -3' miRNA: 3'- -GGGUCGagCCCGCGGGugUgcc-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 10008 | 0.66 | 0.562716 |
Target: 5'- cCCCGGgaCGGGC-UCCAUgugagccuCGGCCGa -3' miRNA: 3'- -GGGUCgaGCCCGcGGGUGu-------GCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 150600 | 0.66 | 0.562716 |
Target: 5'- gCCCGGCccaUUGGGCgguaacucccGCCCAaugGGCCGg -3' miRNA: 3'- -GGGUCG---AGCCCG----------CGGGUgugCCGGCg -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 128545 | 0.66 | 0.562716 |
Target: 5'- gCCAGacggCGGcccGCGUCCaggGCGCGGUCGUa -3' miRNA: 3'- gGGUCga--GCC---CGCGGG---UGUGCCGGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 111920 | 0.66 | 0.562716 |
Target: 5'- aCCAGC-CGcugauUGCCCGCgACGGcCCGCa -3' miRNA: 3'- gGGUCGaGCcc---GCGGGUG-UGCC-GGCG- -5' |
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5777 | 5' | -64.1 | NC_001806.1 | + | 85519 | 0.66 | 0.562716 |
Target: 5'- aCCGGUUCGu-CGCCCACGugUGGCagaGCa -3' miRNA: 3'- gGGUCGAGCccGCGGGUGU--GCCGg--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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