miRNA display CGI


Results 101 - 120 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5777 5' -64.1 NC_001806.1 + 113553 0.66 0.550463
Target:  5'- gCCCGGCUCGuGGUccagugcaucaccaGCUacuggaacaaCACGCGGUgCGCg -3'
miRNA:   3'- -GGGUCGAGC-CCG--------------CGG----------GUGUGCCG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 128067 0.66 0.543899
Target:  5'- cCCCAGg-UGGGgGCCCaccaACACGcGCaCGUa -3'
miRNA:   3'- -GGGUCgaGCCCgCGGG----UGUGC-CG-GCG- -5'
5777 5' -64.1 NC_001806.1 + 73111 0.66 0.543899
Target:  5'- aCCCGGC-CGGGCcgccggucGCCgAgGCGGgCGa -3'
miRNA:   3'- -GGGUCGaGCCCG--------CGGgUgUGCCgGCg -5'
5777 5' -64.1 NC_001806.1 + 3446 0.66 0.543899
Target:  5'- gCCAGgcaCUCGa-CGgCCACGCGGCCGg -3'
miRNA:   3'- gGGUC---GAGCccGCgGGUGUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 67865 0.66 0.543899
Target:  5'- aCCCAcGCcgucCGGGCuGCCCGCACauCCGg -3'
miRNA:   3'- -GGGU-CGa---GCCCG-CGGGUGUGccGGCg -5'
5777 5' -64.1 NC_001806.1 + 136683 0.66 0.553284
Target:  5'- aCCAGCcguUgGGGCuGCagaCCGCG-GGCCGCc -3'
miRNA:   3'- gGGUCG---AgCCCG-CG---GGUGUgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 151534 0.66 0.553284
Target:  5'- -aCGGCgccCGuGG-GCCCGgGCGGCCGg -3'
miRNA:   3'- ggGUCGa--GC-CCgCGGGUgUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 10008 0.66 0.562716
Target:  5'- cCCCGGgaCGGGC-UCCAUgugagccuCGGCCGa -3'
miRNA:   3'- -GGGUCgaGCCCGcGGGUGu-------GCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 150600 0.66 0.562716
Target:  5'- gCCCGGCccaUUGGGCgguaacucccGCCCAaugGGCCGg -3'
miRNA:   3'- -GGGUCG---AGCCCG----------CGGGUgugCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 128545 0.66 0.562716
Target:  5'- gCCAGacggCGGcccGCGUCCaggGCGCGGUCGUa -3'
miRNA:   3'- gGGUCga--GCC---CGCGGG---UGUGCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 111920 0.66 0.562716
Target:  5'- aCCAGC-CGcugauUGCCCGCgACGGcCCGCa -3'
miRNA:   3'- gGGUCGaGCcc---GCGGGUG-UGCC-GGCG- -5'
5777 5' -64.1 NC_001806.1 + 85519 0.66 0.562716
Target:  5'- aCCGGUUCGu-CGCCCACGugUGGCagaGCa -3'
miRNA:   3'- gGGUCGAGCccGCGGGUGU--GCCGg--CG- -5'
5777 5' -64.1 NC_001806.1 + 54624 0.66 0.562716
Target:  5'- gCCAGCcCgGGGUGgUCGCACgacuccugGGCCGUa -3'
miRNA:   3'- gGGUCGaG-CCCGCgGGUGUG--------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 23937 0.66 0.562716
Target:  5'- gCCGGCggCGGG-GCCUgggGgGGCCGCc -3'
miRNA:   3'- gGGUCGa-GCCCgCGGGug-UgCCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 4848 0.66 0.562716
Target:  5'- gUCgGGCgUCGGGauCGUCCGgACGGCCu- -3'
miRNA:   3'- -GGgUCG-AGCCC--GCGGGUgUGCCGGcg -5'
5777 5' -64.1 NC_001806.1 + 112357 0.66 0.562716
Target:  5'- gCCUGGCUCGuGGaC-CUCAcCACGGCCacGCa -3'
miRNA:   3'- -GGGUCGAGC-CC-GcGGGU-GUGCCGG--CG- -5'
5777 5' -64.1 NC_001806.1 + 140015 0.66 0.561771
Target:  5'- gUCAGCUccucgcgCGGcgaaaGCGCCCGgagcgcCACGGCCGg -3'
miRNA:   3'- gGGUCGA-------GCC-----CGCGGGU------GUGCCGGCg -5'
5777 5' -64.1 NC_001806.1 + 24353 0.66 0.561771
Target:  5'- uUCGGCcCGGGgGUCUucGCGCgcguggaGGCCGCg -3'
miRNA:   3'- gGGUCGaGCCCgCGGG--UGUG-------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 126906 0.66 0.558938
Target:  5'- aCCCAGCaa-GGCGUCCAUucucccgaaccaGGCCGUu -3'
miRNA:   3'- -GGGUCGagcCCGCGGGUGug----------CCGGCG- -5'
5777 5' -64.1 NC_001806.1 + 7031 0.66 0.557051
Target:  5'- cCCCAGUUgggcCGGGCGaCCCagauguuuacuuaaaAgGCGuGCCGUc -3'
miRNA:   3'- -GGGUCGA----GCCCGC-GGG---------------UgUGC-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.