miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5779 3' -54 NC_001806.1 + 151432 0.69 0.825993
Target:  5'- gGGGgcccACCGGCGGGGgGCGGCgGCGg -3'
miRNA:   3'- -UCCacuuUGGUUGUCUCgUGCCG-CGU- -5'
5779 3' -54 NC_001806.1 + 151278 0.68 0.895585
Target:  5'- cGGUgGggGCCGGggcCGGGGgGCGGCgGCGg -3'
miRNA:   3'- uCCA-CuuUGGUU---GUCUCgUGCCG-CGU- -5'
5779 3' -54 NC_001806.1 + 151181 0.68 0.895585
Target:  5'- cGGUGAcGCgcaGGCGGAGgGCgaGGCGCGg -3'
miRNA:   3'- uCCACUuUGg--UUGUCUCgUG--CCGCGU- -5'
5779 3' -54 NC_001806.1 + 147622 0.71 0.761332
Target:  5'- cAGGgacGAGugCGACuGGGGCacACGGCGCGc -3'
miRNA:   3'- -UCCa--CUUugGUUG-UCUCG--UGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 144216 0.67 0.902181
Target:  5'- ---cGAcACC-GCAGAGC-CGGCGCGc -3'
miRNA:   3'- uccaCUuUGGuUGUCUCGuGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 143364 0.71 0.741634
Target:  5'- gAGGgacgGggGCCGGCAGAcCgACGGCGaCAa -3'
miRNA:   3'- -UCCa---CuuUGGUUGUCUcG-UGCCGC-GU- -5'
5779 3' -54 NC_001806.1 + 142167 0.71 0.741634
Target:  5'- gGGGUGggGuCCGACGuggcgaugauGGGCGgCGGCGUg -3'
miRNA:   3'- -UCCACuuU-GGUUGU----------CUCGU-GCCGCGu -5'
5779 3' -54 NC_001806.1 + 136900 0.69 0.859083
Target:  5'- gGGGUGAAccuuuacCCAGCcguccucgggGGAGCACaGCGCu -3'
miRNA:   3'- -UCCACUUu------GGUUG----------UCUCGUGcCGCGu -5'
5779 3' -54 NC_001806.1 + 128247 0.69 0.858296
Target:  5'- cAGGaaGAcgcCCAACAGcaaggcguuugucAGCACGGCGCGa -3'
miRNA:   3'- -UCCa-CUuu-GGUUGUC-------------UCGUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 127897 0.75 0.535042
Target:  5'- uAGGcgcGGGugCAGCGGAGCACGGC-CAu -3'
miRNA:   3'- -UCCa--CUUugGUUGUCUCGUGCCGcGU- -5'
5779 3' -54 NC_001806.1 + 126142 0.66 0.936562
Target:  5'- cGGcGAGGCCGGCGccGAcaCGCGGCGCu -3'
miRNA:   3'- uCCaCUUUGGUUGU--CUc-GUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 122358 0.67 0.914637
Target:  5'- cGGUGGcgcGCUGGCGGAaguggcGCACGGcCGCGu -3'
miRNA:   3'- uCCACUu--UGGUUGUCU------CGUGCC-GCGU- -5'
5779 3' -54 NC_001806.1 + 119554 0.66 0.954112
Target:  5'- cGGG-GgcGCCAugGGGGCggcugacgcagauGCGGUGCu -3'
miRNA:   3'- -UCCaCuuUGGUugUCUCG-------------UGCCGCGu -5'
5779 3' -54 NC_001806.1 + 113728 0.66 0.954513
Target:  5'- uGGuUGAugacuuuacccuGACCGGCccGGAGCugGGCGg- -3'
miRNA:   3'- uCC-ACU------------UUGGUUG--UCUCGugCCGCgu -5'
5779 3' -54 NC_001806.1 + 112547 0.68 0.866072
Target:  5'- uGGUccugaacGggGCCAACcuGGuCACGGCGCu -3'
miRNA:   3'- uCCA-------CuuUGGUUGucUC-GUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 109154 0.75 0.495091
Target:  5'- cGGGUGAGGCCAGagucGGCGCGGgGCu -3'
miRNA:   3'- -UCCACUUUGGUUguc-UCGUGCCgCGu -5'
5779 3' -54 NC_001806.1 + 104681 0.69 0.859083
Target:  5'- aGGGUGAGauAUCGGcCGGGGaCGCGGCGg- -3'
miRNA:   3'- -UCCACUU--UGGUU-GUCUC-GUGCCGCgu -5'
5779 3' -54 NC_001806.1 + 101015 0.67 0.9261
Target:  5'- cGG-GAGAgCGGCGGccCGCGGCGCu -3'
miRNA:   3'- uCCaCUUUgGUUGUCucGUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 95641 0.66 0.950391
Target:  5'- cGGUc--GCCAACGGcuuugcGGCGCGcGCGCGc -3'
miRNA:   3'- uCCAcuuUGGUUGUC------UCGUGC-CGCGU- -5'
5779 3' -54 NC_001806.1 + 95297 0.69 0.859083
Target:  5'- gGGGgcggGggGCgCGGCGGAcGCgcccaaggGCGGCGCGg -3'
miRNA:   3'- -UCCa---CuuUG-GUUGUCU-CG--------UGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.