miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5779 3' -54 NC_001806.1 + 1944 0.69 0.842939
Target:  5'- nAGGUcccgcgccGCCGGcCAGcGCACGGCGCAc -3'
miRNA:   3'- -UCCAcuu-----UGGUU-GUCuCGUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 151432 0.69 0.825993
Target:  5'- gGGGgcccACCGGCGGGGgGCGGCgGCGg -3'
miRNA:   3'- -UCCacuuUGGUUGUCUCgUGCCG-CGU- -5'
5779 3' -54 NC_001806.1 + 55233 0.7 0.817238
Target:  5'- cGGUGAcaGAauaCAACGGAGgGuCGGCGCc -3'
miRNA:   3'- uCCACU--UUg--GUUGUCUCgU-GCCGCGu -5'
5779 3' -54 NC_001806.1 + 75212 0.7 0.817238
Target:  5'- cGGUGGAugCGGCcGuGCG-GGCGCAc -3'
miRNA:   3'- uCCACUUugGUUGuCuCGUgCCGCGU- -5'
5779 3' -54 NC_001806.1 + 94069 0.7 0.816353
Target:  5'- cAGGUGcAGACCuauguguuucaGAUAGAGCugcuccgGCGGUGCGa -3'
miRNA:   3'- -UCCAC-UUUGG-----------UUGUCUCG-------UGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 2612 0.7 0.79921
Target:  5'- cGGGUGGu-CCGugAGcucGGcCACGGCGCGc -3'
miRNA:   3'- -UCCACUuuGGUugUC---UC-GUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 3718 0.7 0.79921
Target:  5'- ------cGCCAACAGgggcgcguaGGCGCGGCGCAg -3'
miRNA:   3'- uccacuuUGGUUGUC---------UCGUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 90989 0.7 0.79921
Target:  5'- aGGGUaAGACCccGCGGGGCG-GGCGCGa -3'
miRNA:   3'- -UCCAcUUUGGu-UGUCUCGUgCCGCGU- -5'
5779 3' -54 NC_001806.1 + 2726 0.7 0.79921
Target:  5'- gGGGUcGggGCCcucGGCGG-GC-CGGCGCGa -3'
miRNA:   3'- -UCCA-CuuUGG---UUGUCuCGuGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 34300 0.7 0.79921
Target:  5'- gGGGUuu-AgCGGCGGGGgGCGGCGCGc -3'
miRNA:   3'- -UCCAcuuUgGUUGUCUCgUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 20714 0.7 0.789955
Target:  5'- gGGGUGGGcccGCCGGgGGGGCGgGGgGCc -3'
miRNA:   3'- -UCCACUU---UGGUUgUCUCGUgCCgCGu -5'
5779 3' -54 NC_001806.1 + 4662 0.7 0.771006
Target:  5'- cGGcuGGGCCGGCGG-GCGCGGCGaCAg -3'
miRNA:   3'- uCCacUUUGGUUGUCuCGUGCCGC-GU- -5'
5779 3' -54 NC_001806.1 + 40014 0.7 0.770044
Target:  5'- gAGGUGcugcaggGAACgGACGgcGAGCAUGGCGUg -3'
miRNA:   3'- -UCCAC-------UUUGgUUGU--CUCGUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 147622 0.71 0.761332
Target:  5'- cAGGgacGAGugCGACuGGGGCacACGGCGCGc -3'
miRNA:   3'- -UCCa--CUUugGUUG-UCUCG--UGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 142167 0.71 0.741634
Target:  5'- gGGGUGggGuCCGACGuggcgaugauGGGCGgCGGCGUg -3'
miRNA:   3'- -UCCACuuU-GGUUGU----------CUCGU-GCCGCGu -5'
5779 3' -54 NC_001806.1 + 143364 0.71 0.741634
Target:  5'- gAGGgacgGggGCCGGCAGAcCgACGGCGaCAa -3'
miRNA:   3'- -UCCa---CuuUGGUUGUCUcG-UGCCGC-GU- -5'
5779 3' -54 NC_001806.1 + 20546 0.71 0.721537
Target:  5'- cGGUaauGAGauGCCAuGCGGGGCGgGGCGCGg -3'
miRNA:   3'- uCCA---CUU--UGGU-UGUCUCGUgCCGCGU- -5'
5779 3' -54 NC_001806.1 + 20417 0.72 0.711362
Target:  5'- cGGG-GAcGGCCAACGGGcGCGCGGgGCu -3'
miRNA:   3'- -UCCaCU-UUGGUUGUCU-CGUGCCgCGu -5'
5779 3' -54 NC_001806.1 + 4887 0.72 0.711362
Target:  5'- ---gGAGGCCAGCAGAGCcagcugucGCGGCGa- -3'
miRNA:   3'- uccaCUUUGGUUGUCUCG--------UGCCGCgu -5'
5779 3' -54 NC_001806.1 + 20186 0.72 0.689777
Target:  5'- ---cGggGCCGGCGcggagucGGGCACGGCGCc -3'
miRNA:   3'- uccaCuuUGGUUGU-------CUCGUGCCGCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.