Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5779 | 3' | -54 | NC_001806.1 | + | 1944 | 0.69 | 0.842939 |
Target: 5'- nAGGUcccgcgccGCCGGcCAGcGCACGGCGCAc -3' miRNA: 3'- -UCCAcuu-----UGGUU-GUCuCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 151432 | 0.69 | 0.825993 |
Target: 5'- gGGGgcccACCGGCGGGGgGCGGCgGCGg -3' miRNA: 3'- -UCCacuuUGGUUGUCUCgUGCCG-CGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 55233 | 0.7 | 0.817238 |
Target: 5'- cGGUGAcaGAauaCAACGGAGgGuCGGCGCc -3' miRNA: 3'- uCCACU--UUg--GUUGUCUCgU-GCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 75212 | 0.7 | 0.817238 |
Target: 5'- cGGUGGAugCGGCcGuGCG-GGCGCAc -3' miRNA: 3'- uCCACUUugGUUGuCuCGUgCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 94069 | 0.7 | 0.816353 |
Target: 5'- cAGGUGcAGACCuauguguuucaGAUAGAGCugcuccgGCGGUGCGa -3' miRNA: 3'- -UCCAC-UUUGG-----------UUGUCUCG-------UGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 2612 | 0.7 | 0.79921 |
Target: 5'- cGGGUGGu-CCGugAGcucGGcCACGGCGCGc -3' miRNA: 3'- -UCCACUuuGGUugUC---UC-GUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 3718 | 0.7 | 0.79921 |
Target: 5'- ------cGCCAACAGgggcgcguaGGCGCGGCGCAg -3' miRNA: 3'- uccacuuUGGUUGUC---------UCGUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 90989 | 0.7 | 0.79921 |
Target: 5'- aGGGUaAGACCccGCGGGGCG-GGCGCGa -3' miRNA: 3'- -UCCAcUUUGGu-UGUCUCGUgCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 2726 | 0.7 | 0.79921 |
Target: 5'- gGGGUcGggGCCcucGGCGG-GC-CGGCGCGa -3' miRNA: 3'- -UCCA-CuuUGG---UUGUCuCGuGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 34300 | 0.7 | 0.79921 |
Target: 5'- gGGGUuu-AgCGGCGGGGgGCGGCGCGc -3' miRNA: 3'- -UCCAcuuUgGUUGUCUCgUGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 20714 | 0.7 | 0.789955 |
Target: 5'- gGGGUGGGcccGCCGGgGGGGCGgGGgGCc -3' miRNA: 3'- -UCCACUU---UGGUUgUCUCGUgCCgCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 4662 | 0.7 | 0.771006 |
Target: 5'- cGGcuGGGCCGGCGG-GCGCGGCGaCAg -3' miRNA: 3'- uCCacUUUGGUUGUCuCGUGCCGC-GU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 40014 | 0.7 | 0.770044 |
Target: 5'- gAGGUGcugcaggGAACgGACGgcGAGCAUGGCGUg -3' miRNA: 3'- -UCCAC-------UUUGgUUGU--CUCGUGCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 147622 | 0.71 | 0.761332 |
Target: 5'- cAGGgacGAGugCGACuGGGGCacACGGCGCGc -3' miRNA: 3'- -UCCa--CUUugGUUG-UCUCG--UGCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 142167 | 0.71 | 0.741634 |
Target: 5'- gGGGUGggGuCCGACGuggcgaugauGGGCGgCGGCGUg -3' miRNA: 3'- -UCCACuuU-GGUUGU----------CUCGU-GCCGCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 143364 | 0.71 | 0.741634 |
Target: 5'- gAGGgacgGggGCCGGCAGAcCgACGGCGaCAa -3' miRNA: 3'- -UCCa---CuuUGGUUGUCUcG-UGCCGC-GU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 20546 | 0.71 | 0.721537 |
Target: 5'- cGGUaauGAGauGCCAuGCGGGGCGgGGCGCGg -3' miRNA: 3'- uCCA---CUU--UGGU-UGUCUCGUgCCGCGU- -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 20417 | 0.72 | 0.711362 |
Target: 5'- cGGG-GAcGGCCAACGGGcGCGCGGgGCu -3' miRNA: 3'- -UCCaCU-UUGGUUGUCU-CGUGCCgCGu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 4887 | 0.72 | 0.711362 |
Target: 5'- ---gGAGGCCAGCAGAGCcagcugucGCGGCGa- -3' miRNA: 3'- uccaCUUUGGUUGUCUCG--------UGCCGCgu -5' |
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5779 | 3' | -54 | NC_001806.1 | + | 20186 | 0.72 | 0.689777 |
Target: 5'- ---cGggGCCGGCGcggagucGGGCACGGCGCc -3' miRNA: 3'- uccaCuuUGGUUGU-------CUCGUGCCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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