miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5780 3' -51 NC_001806.1 + 83808 0.66 0.986709
Target:  5'- gGGCGAGgaggGGGCGGGgucGGCGCg-- -3'
miRNA:   3'- aUCGCUCaa--UCUGUCCgu-UCGUGaug -5'
5780 3' -51 NC_001806.1 + 65806 0.66 0.986709
Target:  5'- cGGCGAG-UGGugGGGUcgagauucgacaAGGcCGCUGCc -3'
miRNA:   3'- aUCGCUCaAUCugUCCG------------UUC-GUGAUG- -5'
5780 3' -51 NC_001806.1 + 5096 0.66 0.986709
Target:  5'- cGGCGGcccGUcGGugGGGCccggggagccgGGGCGCUGCu -3'
miRNA:   3'- aUCGCU---CAaUCugUCCG-----------UUCGUGAUG- -5'
5780 3' -51 NC_001806.1 + 77520 0.66 0.984931
Target:  5'- -uGCGAGUgagcggAGGCccgGGGCcccuGGUGCUGCg -3'
miRNA:   3'- auCGCUCAa-----UCUG---UCCGu---UCGUGAUG- -5'
5780 3' -51 NC_001806.1 + 143324 0.66 0.984931
Target:  5'- gUGGUGAGggGGGgGGG-GGGCGCUGg -3'
miRNA:   3'- -AUCGCUCaaUCUgUCCgUUCGUGAUg -5'
5780 3' -51 NC_001806.1 + 24048 0.66 0.984743
Target:  5'- gGGCGGGcaaUUGGACcGGCGcccccgacgugucGGCGCUGg -3'
miRNA:   3'- aUCGCUC---AAUCUGuCCGU-------------UCGUGAUg -5'
5780 3' -51 NC_001806.1 + 18931 0.67 0.978502
Target:  5'- -cGCGuaucaggUGGcGCAGGCGguuGGCACUGCg -3'
miRNA:   3'- auCGCuca----AUC-UGUCCGU---UCGUGAUG- -5'
5780 3' -51 NC_001806.1 + 69710 0.67 0.97024
Target:  5'- gGGgGAGUUugAGACGGcCGAGCGCcGCu -3'
miRNA:   3'- aUCgCUCAA--UCUGUCcGUUCGUGaUG- -5'
5780 3' -51 NC_001806.1 + 148201 0.67 0.967039
Target:  5'- cGGCGGG--GGGCGGGCGguacguAGUcuGCUGCa -3'
miRNA:   3'- aUCGCUCaaUCUGUCCGU------UCG--UGAUG- -5'
5780 3' -51 NC_001806.1 + 18888 0.68 0.959922
Target:  5'- -cGCGGGgccAGACGGGCucGGCAgUAUc -3'
miRNA:   3'- auCGCUCaa-UCUGUCCGu-UCGUgAUG- -5'
5780 3' -51 NC_001806.1 + 40864 0.68 0.955993
Target:  5'- gGGCGG---GGACGGGCAuGCACa-- -3'
miRNA:   3'- aUCGCUcaaUCUGUCCGUuCGUGaug -5'
5780 3' -51 NC_001806.1 + 3541 0.68 0.955993
Target:  5'- -cGCGGGggAGGCGGGCGcGGCGg-ACa -3'
miRNA:   3'- auCGCUCaaUCUGUCCGU-UCGUgaUG- -5'
5780 3' -51 NC_001806.1 + 4659 0.68 0.951811
Target:  5'- cGGCG-GcUGGGCcGGCGGGCGCgGCg -3'
miRNA:   3'- aUCGCuCaAUCUGuCCGUUCGUGaUG- -5'
5780 3' -51 NC_001806.1 + 29664 0.69 0.937699
Target:  5'- gAGgGAGgaaUAGGCGGGCGGGCGa--- -3'
miRNA:   3'- aUCgCUCa--AUCUGUCCGUUCGUgaug -5'
5780 3' -51 NC_001806.1 + 63836 0.71 0.847487
Target:  5'- cAGCGAGUcaaggaccuugaGGGCGGGCAuGaCGCUGCg -3'
miRNA:   3'- aUCGCUCAa-----------UCUGUCCGUuC-GUGAUG- -5'
5780 3' -51 NC_001806.1 + 146081 0.72 0.822968
Target:  5'- aGGUcAGUccGGGCGGGCAGGCGCUcGCg -3'
miRNA:   3'- aUCGcUCAa-UCUGUCCGUUCGUGA-UG- -5'
5780 3' -51 NC_001806.1 + 45319 0.72 0.803564
Target:  5'- cGGCGAGgaGGGCGGGCGcgaugggaucgggGGCGCg-- -3'
miRNA:   3'- aUCGCUCaaUCUGUCCGU-------------UCGUGaug -5'
5780 3' -51 NC_001806.1 + 99647 0.75 0.671209
Target:  5'- gUGGCGGGccuGGCGGGCAGGCAgCUGg -3'
miRNA:   3'- -AUCGCUCaauCUGUCCGUUCGU-GAUg -5'
5780 3' -51 NC_001806.1 + 135105 0.76 0.617029
Target:  5'- cGGgGAGggGGGCGGGgGcAGCGCUGCg -3'
miRNA:   3'- aUCgCUCaaUCUGUCCgU-UCGUGAUG- -5'
5780 3' -51 NC_001806.1 + 151620 0.77 0.563154
Target:  5'- gUGGUaGAGUUuGACAGGCAAGCAUgUGCg -3'
miRNA:   3'- -AUCG-CUCAAuCUGUCCGUUCGUG-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.