miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5781 3' -56.7 NC_001806.1 + 151686 0.66 0.872476
Target:  5'- aGUCUCGGCCGgGgGGgCCCGGGc-- -3'
miRNA:   3'- gCAGGGUUGGCgUgUCaGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 130133 0.67 0.844734
Target:  5'- aGUUCCugcggccaguggcCCGCGCAGuucUCCCAGGUc- -3'
miRNA:   3'- gCAGGGuu-----------GGCGUGUC---AGGGUCCAuu -5'
5781 3' -56.7 NC_001806.1 + 107468 0.67 0.841491
Target:  5'- -cUCCgGACCGCGCuGgCCCGGGc-- -3'
miRNA:   3'- gcAGGgUUGGCGUGuCaGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 123941 0.67 0.833249
Target:  5'- cCG-CCCGcccCUGCGCAGaUCCCAGGc-- -3'
miRNA:   3'- -GCaGGGUu--GGCGUGUC-AGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 64859 0.67 0.824823
Target:  5'- aGcCCCu-CCGCGC-GUCCCGGGc-- -3'
miRNA:   3'- gCaGGGuuGGCGUGuCAGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 57772 0.67 0.816222
Target:  5'- cCGUCCCGuccGCCGCAUcggAGUCguccuccguguCCAGGg-- -3'
miRNA:   3'- -GCAGGGU---UGGCGUG---UCAG-----------GGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 6054 0.67 0.816222
Target:  5'- cCGUgCCCGAcuCCGCGcCGGcCCCGGGg-- -3'
miRNA:   3'- -GCA-GGGUU--GGCGU-GUCaGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 50186 0.68 0.78944
Target:  5'- gGUCCCuGCUGUACuGgCCCGGGg-- -3'
miRNA:   3'- gCAGGGuUGGCGUGuCaGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 102508 0.68 0.761377
Target:  5'- gGUCCCGaucACCGCGgcCAGgcaCgCCAGGUAGc -3'
miRNA:   3'- gCAGGGU---UGGCGU--GUCa--G-GGUCCAUU- -5'
5781 3' -56.7 NC_001806.1 + 147760 0.68 0.751781
Target:  5'- gGUCCCGacgcgGCCGCggacGCGGggggCCCGGGg-- -3'
miRNA:   3'- gCAGGGU-----UGGCG----UGUCa---GGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 15734 0.68 0.742077
Target:  5'- -uUCCCGGCCGCGCGGgagcgguagCgCgAGGUGAg -3'
miRNA:   3'- gcAGGGUUGGCGUGUCa--------G-GgUCCAUU- -5'
5781 3' -56.7 NC_001806.1 + 6822 0.69 0.732278
Target:  5'- gCGUCCCcuGCUGCGCucUCCCGGGc-- -3'
miRNA:   3'- -GCAGGGu-UGGCGUGucAGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 79930 0.7 0.67197
Target:  5'- gGUCgCAACCgGCACGGUuuugCCCGGGg-- -3'
miRNA:   3'- gCAGgGUUGG-CGUGUCA----GGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 3126 0.7 0.661753
Target:  5'- gGUCCCGcgGCaGCGCGGggCCCAGGg-- -3'
miRNA:   3'- gCAGGGU--UGgCGUGUCa-GGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 37257 0.7 0.630989
Target:  5'- uCGUCCaGGCCGCACAGgccucgcgCCuuCAGGUAGc -3'
miRNA:   3'- -GCAGGgUUGGCGUGUCa-------GG--GUCCAUU- -5'
5781 3' -56.7 NC_001806.1 + 44827 0.71 0.600232
Target:  5'- aCGUCacguCGAcCCGCAgGGUCCCGGGg-- -3'
miRNA:   3'- -GCAGg---GUU-GGCGUgUCAGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 150070 0.73 0.500235
Target:  5'- --cCCCAaugGCCGCGC-GUCCCAGGg-- -3'
miRNA:   3'- gcaGGGU---UGGCGUGuCAGGGUCCauu -5'
5781 3' -56.7 NC_001806.1 + 104187 0.74 0.443835
Target:  5'- aGUCggGGCgGCGCGGUCCCAGGUc- -3'
miRNA:   3'- gCAGggUUGgCGUGUCAGGGUCCAuu -5'
5781 3' -56.7 NC_001806.1 + 6919 0.74 0.417004
Target:  5'- aGUCCCcguaauccgguAAcCCGUugAGUCCCGGGUAc -3'
miRNA:   3'- gCAGGG-----------UU-GGCGugUCAGGGUCCAUu -5'
5781 3' -56.7 NC_001806.1 + 26439 1.06 0.003648
Target:  5'- cCGUCCCAACCGCACAGUCCCAGGUAAc -3'
miRNA:   3'- -GCAGGGUUGGCGUGUCAGGGUCCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.