miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5781 5' -57.2 NC_001806.1 + 149524 0.67 0.840728
Target:  5'- cCCCAACagGGcGACCCcgGUcccuguauauauagGGUCAGGGGg -3'
miRNA:   3'- -GGGUUGagCC-UUGGG--CG--------------CCAGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 147762 0.72 0.588723
Target:  5'- uCCCGACgcggccgCGGAcgcgggggGCCCGgGG-CGGGGGg -3'
miRNA:   3'- -GGGUUGa------GCCU--------UGGGCgCCaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 147210 0.72 0.588723
Target:  5'- cCCCGGCggCGGAAgaggcggccCCCGCGGgggUCGGGGc -3'
miRNA:   3'- -GGGUUGa-GCCUU---------GGGCGCC---AGUCCUc -5'
5781 5' -57.2 NC_001806.1 + 146786 0.74 0.486182
Target:  5'- gCCGucggguACUCGGGgggcaucacgugguuACCCGCGGUCucgGGGAGc -3'
miRNA:   3'- gGGU------UGAGCCU---------------UGGGCGCCAG---UCCUC- -5'
5781 5' -57.2 NC_001806.1 + 144972 0.7 0.658665
Target:  5'- gCCCGGCcCGGGGCCCcgGCGGacccaAGGGGc -3'
miRNA:   3'- -GGGUUGaGCCUUGGG--CGCCag---UCCUC- -5'
5781 5' -57.2 NC_001806.1 + 143582 0.67 0.850149
Target:  5'- aCCCAcCUCGGGauacccaGCCC-CGGUCccccguuccccGGGGGc -3'
miRNA:   3'- -GGGUuGAGCCU-------UGGGcGCCAG-----------UCCUC- -5'
5781 5' -57.2 NC_001806.1 + 135617 0.67 0.850922
Target:  5'- cCCCcGCUguugcgcgcCGGAGCUCGCGGUCGc--- -3'
miRNA:   3'- -GGGuUGA---------GCCUUGGGCGCCAGUccuc -5'
5781 5' -57.2 NC_001806.1 + 135225 0.66 0.900001
Target:  5'- cCCCAggaugACaUCGGAGCCCGUgauGGgcgcgccuaccCGGGGGg -3'
miRNA:   3'- -GGGU-----UG-AGCCUUGGGCG---CCa----------GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 133123 0.73 0.529832
Target:  5'- gCCAGCUCGGugaAGuuCGCGGUCugcGGGGg -3'
miRNA:   3'- gGGUUGAGCC---UUggGCGCCAGu--CCUC- -5'
5781 5' -57.2 NC_001806.1 + 132757 0.76 0.378242
Target:  5'- -gCAGC-CGGAugccuccuGCCCGCGGUgCGGGAGg -3'
miRNA:   3'- ggGUUGaGCCU--------UGGGCGCCA-GUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 132677 0.66 0.873201
Target:  5'- gCCGcGCUCcuGGGggccugGCCCGCGGUgGGGGc -3'
miRNA:   3'- gGGU-UGAG--CCU------UGGGCGCCAgUCCUc -5'
5781 5' -57.2 NC_001806.1 + 130829 0.67 0.835111
Target:  5'- gCCuGCaUUGGGACUCgGCGGcCGGGGGa -3'
miRNA:   3'- gGGuUG-AGCCUUGGG-CGCCaGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 130442 0.69 0.717901
Target:  5'- gCCCAGCgcgaucuaCGGGAgCUGCGGUgcCGGGAu -3'
miRNA:   3'- -GGGUUGa-------GCCUUgGGCGCCA--GUCCUc -5'
5781 5' -57.2 NC_001806.1 + 122927 0.66 0.880222
Target:  5'- uCCCGACgccaGGGACCa-CGGUCuGGuGg -3'
miRNA:   3'- -GGGUUGag--CCUUGGgcGCCAGuCCuC- -5'
5781 5' -57.2 NC_001806.1 + 122561 0.68 0.818595
Target:  5'- gCCCGuuuUUUGGGgggGCCCGUGGUCuccgugaggcuGGAGg -3'
miRNA:   3'- -GGGUu--GAGCCU---UGGGCGCCAGu----------CCUC- -5'
5781 5' -57.2 NC_001806.1 + 121337 0.68 0.818595
Target:  5'- -aCAGCUCgcggaGGAGCCaGUGGUCGGcGAGc -3'
miRNA:   3'- ggGUUGAG-----CCUUGGgCGCCAGUC-CUC- -5'
5781 5' -57.2 NC_001806.1 + 113748 0.66 0.893626
Target:  5'- aCCGGCcCGGAGCUgGgCGGgCAGGGc -3'
miRNA:   3'- gGGUUGaGCCUUGGgC-GCCaGUCCUc -5'
5781 5' -57.2 NC_001806.1 + 109765 0.71 0.63867
Target:  5'- aUCCAGCUCGGAGCuCCGU--UCGGGu- -3'
miRNA:   3'- -GGGUUGAGCCUUG-GGCGccAGUCCuc -5'
5781 5' -57.2 NC_001806.1 + 102746 0.67 0.835111
Target:  5'- uCCCGAaagUCGGcACUgcggGUGGUCAGGGGa -3'
miRNA:   3'- -GGGUUg--AGCCuUGGg---CGCCAGUCCUC- -5'
5781 5' -57.2 NC_001806.1 + 101149 0.66 0.892976
Target:  5'- cCCCAcCUCGcAGCCagCGCGGugguccacguuaaUCGGGAGu -3'
miRNA:   3'- -GGGUuGAGCcUUGG--GCGCC-------------AGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.