Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5781 | 5' | -57.2 | NC_001806.1 | + | 135225 | 0.66 | 0.900001 |
Target: 5'- cCCCAggaugACaUCGGAGCCCGUgauGGgcgcgccuaccCGGGGGg -3' miRNA: 3'- -GGGU-----UG-AGCCUUGGGCG---CCa----------GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 147762 | 0.72 | 0.588723 |
Target: 5'- uCCCGACgcggccgCGGAcgcgggggGCCCGgGG-CGGGGGg -3' miRNA: 3'- -GGGUUGa------GCCU--------UGGGCgCCaGUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 147210 | 0.72 | 0.588723 |
Target: 5'- cCCCGGCggCGGAAgaggcggccCCCGCGGgggUCGGGGc -3' miRNA: 3'- -GGGUUGa-GCCUU---------GGGCGCC---AGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 11238 | 0.71 | 0.608659 |
Target: 5'- uCCCAACUCaGGGA-CUGCGGUCGGu-- -3' miRNA: 3'- -GGGUUGAG-CCUUgGGCGCCAGUCcuc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 109765 | 0.71 | 0.63867 |
Target: 5'- aUCCAGCUCGGAGCuCCGU--UCGGGu- -3' miRNA: 3'- -GGGUUGAGCCUUG-GGCGccAGUCCuc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 31095 | 0.71 | 0.63867 |
Target: 5'- aCCCGGCUgCGGG--CCGCGGUCcccggcuGGAGc -3' miRNA: 3'- -GGGUUGA-GCCUugGGCGCCAGu------CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 43619 | 0.71 | 0.642673 |
Target: 5'- uCCCAggcuAUUCGGAGCauggccgagagugaCGUGGUCAuGGAGg -3' miRNA: 3'- -GGGU----UGAGCCUUGg-------------GCGCCAGU-CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 144972 | 0.7 | 0.658665 |
Target: 5'- gCCCGGCcCGGGGCCCcgGCGGacccaAGGGGc -3' miRNA: 3'- -GGGUUGaGCCUUGGG--CGCCag---UCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 23570 | 0.7 | 0.66764 |
Target: 5'- gCCCAGCcacacggCGGcGCCCGCGGcCGccgcccuGGAGg -3' miRNA: 3'- -GGGUUGa------GCCuUGGGCGCCaGU-------CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 86800 | 0.72 | 0.588723 |
Target: 5'- gCCCAGCgcgcgUGGAcguACUCGCGGUCGcGAGc -3' miRNA: 3'- -GGGUUGa----GCCU---UGGGCGCCAGUcCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 50485 | 0.73 | 0.529832 |
Target: 5'- gCCCugcccCUgGGAAgcCCCGCGGUCGuGGGGg -3' miRNA: 3'- -GGGuu---GAgCCUU--GGGCGCCAGU-CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 133123 | 0.73 | 0.529832 |
Target: 5'- gCCAGCUCGGugaAGuuCGCGGUCugcGGGGg -3' miRNA: 3'- gGGUUGAGCC---UUggGCGCCAGu--CCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 49099 | 0.86 | 0.08642 |
Target: 5'- gUCGGCUCGcGAACCCGCGGggcgCAGGAGg -3' miRNA: 3'- gGGUUGAGC-CUUGGGCGCCa---GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 46225 | 0.8 | 0.213922 |
Target: 5'- cCCCGGCggCGGAgaccACCCGCGG-CAGGAa -3' miRNA: 3'- -GGGUUGa-GCCU----UGGGCGCCaGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 65699 | 0.79 | 0.246768 |
Target: 5'- cCCCAAC-CGGGGCCCGCGcuucgaCGGGAGa -3' miRNA: 3'- -GGGUUGaGCCUUGGGCGCca----GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 132757 | 0.76 | 0.378242 |
Target: 5'- -gCAGC-CGGAugccuccuGCCCGCGGUgCGGGAGg -3' miRNA: 3'- ggGUUGaGCCU--------UGGGCGCCA-GUCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 146786 | 0.74 | 0.486182 |
Target: 5'- gCCGucggguACUCGGGgggcaucacgugguuACCCGCGGUCucgGGGAGc -3' miRNA: 3'- gGGU------UGAGCCU---------------UGGGCGCCAG---UCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 31282 | 0.73 | 0.491783 |
Target: 5'- gCCugcgguCUCGGcACCCGUGGUCcGGGGa -3' miRNA: 3'- gGGuu----GAGCCuUGGGCGCCAGuCCUC- -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 7536 | 0.73 | 0.514472 |
Target: 5'- cCCCAcaacauggagcauacGCUCGG-GCCCGCG-UCGGGAu -3' miRNA: 3'- -GGGU---------------UGAGCCuUGGGCGCcAGUCCUc -5' |
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5781 | 5' | -57.2 | NC_001806.1 | + | 33117 | 0.73 | 0.520211 |
Target: 5'- uCCgGACggggccCGGAcCgCCGCGGUCGGGGGc -3' miRNA: 3'- -GGgUUGa-----GCCUuG-GGCGCCAGUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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