Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5782 | 3' | -54.5 | NC_001806.1 | + | 28262 | 1.07 | 0.004678 |
Target: 5'- cUUACACUGGAACCGGCCGCCAUGUUGg -3' miRNA: 3'- -AAUGUGACCUUGGCCGGCGGUACAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 28303 | 0.9 | 0.059317 |
Target: 5'- aUACACgGGAGCCGGgCGCCAUGUUGg -3' miRNA: 3'- aAUGUGaCCUUGGCCgGCGGUACAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 76274 | 0.75 | 0.479525 |
Target: 5'- -gGCGCUGGAcCUGGCCGCCGc---- -3' miRNA: 3'- aaUGUGACCUuGGCCGGCGGUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 70132 | 0.74 | 0.539273 |
Target: 5'- -cGCGCUGaucacccuccucGAACCGGCCGCCcgGg-- -3' miRNA: 3'- aaUGUGAC------------CUUGGCCGGCGGuaCaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 28587 | 0.73 | 0.570102 |
Target: 5'- -cACACaaGGACCggGGUCGCCGUGUUGg -3' miRNA: 3'- aaUGUGacCUUGG--CCGGCGGUACAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 28368 | 0.73 | 0.58048 |
Target: 5'- aUAUACaGGGACCGGgggCGCCAUGUUa -3' miRNA: 3'- aAUGUGaCCUUGGCCg--GCGGUACAAc -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 28173 | 0.73 | 0.590896 |
Target: 5'- -aGCGCgaggugaGGGGCCGGgCGCCAUGUcUGg -3' miRNA: 3'- aaUGUGa------CCUUGGCCgGCGGUACA-AC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 108856 | 0.73 | 0.601344 |
Target: 5'- -gGCugUGGuuCCGGCCGCCAg---- -3' miRNA: 3'- aaUGugACCuuGGCCGGCGGUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 22435 | 0.72 | 0.642245 |
Target: 5'- ---gGCUGGGGCCuggcgcacgcggcGGCCGCCGUGg-- -3' miRNA: 3'- aaugUGACCUUGG-------------CCGGCGGUACaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 28422 | 0.72 | 0.664248 |
Target: 5'- aUAUACaGGGACCggGGUCGCCcUGUUGg -3' miRNA: 3'- aAUGUGaCCUUGG--CCGGCGGuACAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 3814 | 0.71 | 0.673646 |
Target: 5'- gUGCGCcaGGccccagccgaagcGGCCGGCCGCCAUGg-- -3' miRNA: 3'- aAUGUGa-CC-------------UUGGCCGGCGGUACaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 130831 | 0.7 | 0.736227 |
Target: 5'- cUGCAUUGGGACuCGGCgGCCggGg-- -3' miRNA: 3'- aAUGUGACCUUG-GCCGgCGGuaCaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 65672 | 0.7 | 0.775479 |
Target: 5'- cUGCGCUGGGgccGCCGGCCuCC-UGUc- -3' miRNA: 3'- aAUGUGACCU---UGGCCGGcGGuACAac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 68592 | 0.69 | 0.798036 |
Target: 5'- -gGCcCUGGGGCCGGUccgcguccgccagugCGCCGUGgagUGg -3' miRNA: 3'- aaUGuGACCUUGGCCG---------------GCGGUACa--AC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 51591 | 0.68 | 0.83013 |
Target: 5'- -gGCGCUGGGcgagguggagcuGcCCGGCgGCCA-GUUGa -3' miRNA: 3'- aaUGUGACCU------------U-GGCCGgCGGUaCAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 148022 | 0.68 | 0.83013 |
Target: 5'- ---gGCgGGAGCCGccGCCGCCGcugcUGUUGg -3' miRNA: 3'- aaugUGaCCUUGGC--CGGCGGU----ACAAC- -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 68558 | 0.68 | 0.846925 |
Target: 5'- aUGCGCUGGAuuccGCCGGCCuGCgCAc---- -3' miRNA: 3'- aAUGUGACCU----UGGCCGG-CG-GUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 24627 | 0.68 | 0.846925 |
Target: 5'- -cGCGCUGGGGCCugGGCgCGCCGc---- -3' miRNA: 3'- aaUGUGACCUUGG--CCG-GCGGUacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 43790 | 0.68 | 0.855019 |
Target: 5'- gUUACGCUGGcGCCuGCCGCCc----- -3' miRNA: 3'- -AAUGUGACCuUGGcCGGCGGuacaac -5' |
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5782 | 3' | -54.5 | NC_001806.1 | + | 115084 | 0.68 | 0.870563 |
Target: 5'- -cGC-CUGGGGCCGGCCcagcccguccCCGUGUUc -3' miRNA: 3'- aaUGuGACCUUGGCCGGc---------GGUACAAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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