miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5782 3' -54.5 NC_001806.1 + 68076 0.67 0.883071
Target:  5'- cUACGCUGucccccacccacgcGAGCCGGgCGUCAUGg-- -3'
miRNA:   3'- aAUGUGAC--------------CUUGGCCgGCGGUACaac -5'
5782 3' -54.5 NC_001806.1 + 68558 0.68 0.846925
Target:  5'- aUGCGCUGGAuuccGCCGGCCuGCgCAc---- -3'
miRNA:   3'- aAUGUGACCU----UGGCCGG-CG-GUacaac -5'
5782 3' -54.5 NC_001806.1 + 68592 0.69 0.798036
Target:  5'- -gGCcCUGGGGCCGGUccgcguccgccagugCGCCGUGgagUGg -3'
miRNA:   3'- aaUGuGACCUUGGCCG---------------GCGGUACa--AC- -5'
5782 3' -54.5 NC_001806.1 + 70132 0.74 0.539273
Target:  5'- -cGCGCUGaucacccuccucGAACCGGCCGCCcgGg-- -3'
miRNA:   3'- aaUGUGAC------------CUUGGCCGGCGGuaCaac -5'
5782 3' -54.5 NC_001806.1 + 70511 0.66 0.933593
Target:  5'- -cGC-CUGGGGCCcuGGCCccccgagGCCAUGggGg -3'
miRNA:   3'- aaUGuGACCUUGG--CCGG-------CGGUACaaC- -5'
5782 3' -54.5 NC_001806.1 + 76274 0.75 0.479525
Target:  5'- -gGCGCUGGAcCUGGCCGCCGc---- -3'
miRNA:   3'- aaUGUGACCUuGGCCGGCGGUacaac -5'
5782 3' -54.5 NC_001806.1 + 77719 0.66 0.939093
Target:  5'- -cACcCUGGAGUCGGCCucgaccgucacgGCCAUGUa- -3'
miRNA:   3'- aaUGuGACCUUGGCCGG------------CGGUACAac -5'
5782 3' -54.5 NC_001806.1 + 90850 0.67 0.898911
Target:  5'- -----gUGGGACCcGCCGCCGUGg-- -3'
miRNA:   3'- aaugugACCUUGGcCGGCGGUACaac -5'
5782 3' -54.5 NC_001806.1 + 102487 0.66 0.911641
Target:  5'- gUACugUGG--CCGGCCGCCcucgGUc- -3'
miRNA:   3'- aAUGugACCuuGGCCGGCGGua--CAac -5'
5782 3' -54.5 NC_001806.1 + 102666 0.66 0.911641
Target:  5'- -gGCGCUGGcccacauacAGCCGGCCGCaCGc---- -3'
miRNA:   3'- aaUGUGACC---------UUGGCCGGCG-GUacaac -5'
5782 3' -54.5 NC_001806.1 + 103100 0.66 0.917633
Target:  5'- -gGCGCUcgauaucgacggGGAGCuCGGCCGCCugcAUGgcGg -3'
miRNA:   3'- aaUGUGA------------CCUUG-GCCGGCGG---UACaaC- -5'
5782 3' -54.5 NC_001806.1 + 108856 0.73 0.601344
Target:  5'- -gGCugUGGuuCCGGCCGCCAg---- -3'
miRNA:   3'- aaUGugACCuuGGCCGGCGGUacaac -5'
5782 3' -54.5 NC_001806.1 + 112230 0.66 0.939093
Target:  5'- aUAC-CUGGAcaaCGGCCGCC-UGg-- -3'
miRNA:   3'- aAUGuGACCUug-GCCGGCGGuACaac -5'
5782 3' -54.5 NC_001806.1 + 113996 0.66 0.934105
Target:  5'- -gACGCcgcGGAugACCGGCCGCaCcgGggGg -3'
miRNA:   3'- aaUGUGa--CCU--UGGCCGGCG-GuaCaaC- -5'
5782 3' -54.5 NC_001806.1 + 115084 0.68 0.870563
Target:  5'- -cGC-CUGGGGCCGGCCcagcccguccCCGUGUUc -3'
miRNA:   3'- aaUGuGACCUUGGCCGGc---------GGUACAAc -5'
5782 3' -54.5 NC_001806.1 + 130831 0.7 0.736227
Target:  5'- cUGCAUUGGGACuCGGCgGCCggGg-- -3'
miRNA:   3'- aAUGUGACCUUG-GCCGgCGGuaCaac -5'
5782 3' -54.5 NC_001806.1 + 148022 0.68 0.83013
Target:  5'- ---gGCgGGAGCCGccGCCGCCGcugcUGUUGg -3'
miRNA:   3'- aaugUGaCCUUGGC--CGGCGGU----ACAAC- -5'
5782 3' -54.5 NC_001806.1 + 149797 0.66 0.917633
Target:  5'- -cGCGCUGGGGgCGGCCcucagGCCGgcggGUa- -3'
miRNA:   3'- aaUGUGACCUUgGCCGG-----CGGUa---CAac -5'
5782 3' -54.5 NC_001806.1 + 150680 0.66 0.911641
Target:  5'- -cGCGCUGG---CGGCCGCCgAUGg-- -3'
miRNA:   3'- aaUGUGACCuugGCCGGCGG-UACaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.