miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5782 5' -58.7 NC_001806.1 + 151688 0.66 0.787356
Target:  5'- uCUCGgcCGgGGGGGcCCGGGCuGCCc-- -3'
miRNA:   3'- -GAGUauGUgCCCUC-GGCCCG-CGGuac -5'
5782 5' -58.7 NC_001806.1 + 148683 0.68 0.685938
Target:  5'- -gCAUGCACGGGAaggugucgagcgcagGUgGGGCGCgAUc -3'
miRNA:   3'- gaGUAUGUGCCCU---------------CGgCCCGCGgUAc -5'
5782 5' -58.7 NC_001806.1 + 147234 0.66 0.787356
Target:  5'- -----cCGCGGGGGUCGGG-GCCGa- -3'
miRNA:   3'- gaguauGUGCCCUCGGCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 146848 0.69 0.610611
Target:  5'- gCUCcaGC-CGGGgaccgcggcccgcAGCCGGGuCGCCAUGu -3'
miRNA:   3'- -GAGuaUGuGCCC-------------UCGGCCC-GCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 146772 0.69 0.641821
Target:  5'- aCUCcgACGCGGGGGCCgucGGGUaCUcgGg -3'
miRNA:   3'- -GAGuaUGUGCCCUCGG---CCCGcGGuaC- -5'
5782 5' -58.7 NC_001806.1 + 139817 0.67 0.740778
Target:  5'- aUCAUgGUACGGG-GCCGGgaGCGCCAg- -3'
miRNA:   3'- gAGUA-UGUGCCCuCGGCC--CGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 132649 0.67 0.721443
Target:  5'- cCUgGUGCGCGGG-GCCGcGGcCGCUu-- -3'
miRNA:   3'- -GAgUAUGUGCCCuCGGC-CC-GCGGuac -5'
5782 5' -58.7 NC_001806.1 + 130435 0.69 0.611616
Target:  5'- cCUCAggGCccagcgcgaucuACGGGAGCUGcGGUGCCGg- -3'
miRNA:   3'- -GAGUa-UG------------UGCCCUCGGC-CCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 128905 0.66 0.8051
Target:  5'- aUCcu-CugGGG-GCCGGGCGUCc-- -3'
miRNA:   3'- gAGuauGugCCCuCGGCCCGCGGuac -5'
5782 5' -58.7 NC_001806.1 + 128275 0.66 0.768143
Target:  5'- gUCA-GCACGGcgcGAGCCGGGCcgacgacGCgAUGa -3'
miRNA:   3'- gAGUaUGUGCC---CUCGGCCCG-------CGgUAC- -5'
5782 5' -58.7 NC_001806.1 + 123743 0.66 0.787356
Target:  5'- aCUCcaacccCACGGGGccuCCGGGCGCCc-- -3'
miRNA:   3'- -GAGuau---GUGCCCUc--GGCCCGCGGuac -5'
5782 5' -58.7 NC_001806.1 + 111538 0.8 0.159041
Target:  5'- -aCGUACACGGGuGGCCGGGCGUUgggGUGg -3'
miRNA:   3'- gaGUAUGUGCCC-UCGGCCCGCGG---UAC- -5'
5782 5' -58.7 NC_001806.1 + 109452 0.67 0.740778
Target:  5'- -cCGUGCGCGGGuugUGGGCGUCAa- -3'
miRNA:   3'- gaGUAUGUGCCCucgGCCCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 106847 0.68 0.691905
Target:  5'- -gCAUACGCggaguuuuucucGGGGGaCgCGGGCGCCGa- -3'
miRNA:   3'- gaGUAUGUG------------CCCUC-G-GCCCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 100490 0.68 0.671958
Target:  5'- gUCAcccugcgGCGCGGcagcgaucGAGCCGGGCGgUAUGu -3'
miRNA:   3'- gAGUa------UGUGCC--------CUCGGCCCGCgGUAC- -5'
5782 5' -58.7 NC_001806.1 + 100395 0.74 0.363383
Target:  5'- ----gGCGCGGGGGCCgGGGUGCCcgAUGu -3'
miRNA:   3'- gaguaUGUGCCCUCGG-CCCGCGG--UAC- -5'
5782 5' -58.7 NC_001806.1 + 96370 0.66 0.8051
Target:  5'- -cCAUGCGCcaGGGcGCCcccgcgcggGGGCGCCGg- -3'
miRNA:   3'- gaGUAUGUG--CCCuCGG---------CCCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 95945 0.72 0.46593
Target:  5'- uUCAU-CAUGGGGGCgGGGgGCUcgGg -3'
miRNA:   3'- gAGUAuGUGCCCUCGgCCCgCGGuaC- -5'
5782 5' -58.7 NC_001806.1 + 84248 0.66 0.787356
Target:  5'- -aCAcgGC-CGGGGGCgCGGGCGCaCcgGc -3'
miRNA:   3'- gaGUa-UGuGCCCUCG-GCCCGCG-GuaC- -5'
5782 5' -58.7 NC_001806.1 + 83661 0.68 0.691905
Target:  5'- -cCGUACcgacgGCGGGGuGcCCGGGCGgCAUGc -3'
miRNA:   3'- gaGUAUG-----UGCCCU-C-GGCCCGCgGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.