Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5782 | 5' | -58.7 | NC_001806.1 | + | 4944 | 0.66 | 0.812891 |
Target: 5'- gUCGgugcccgcCGCGGGGgcccucccgucccGCCGGGCGUCGUc -3' miRNA: 3'- gAGUau------GUGCCCU-------------CGGCCCGCGGUAc -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 146848 | 0.69 | 0.610611 |
Target: 5'- gCUCcaGC-CGGGgaccgcggcccgcAGCCGGGuCGCCAUGu -3' miRNA: 3'- -GAGuaUGuGCCC-------------UCGGCCC-GCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 130435 | 0.69 | 0.611616 |
Target: 5'- cCUCAggGCccagcgcgaucuACGGGAGCUGcGGUGCCGg- -3' miRNA: 3'- -GAGUa-UG------------UGCCCUCGGC-CCGCGGUac -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 71605 | 0.69 | 0.640814 |
Target: 5'- aCUCGUAgccuaauCAgGGGAaCCGGG-GCCAUGg -3' miRNA: 3'- -GAGUAU-------GUgCCCUcGGCCCgCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 146772 | 0.69 | 0.641821 |
Target: 5'- aCUCcgACGCGGGGGCCgucGGGUaCUcgGg -3' miRNA: 3'- -GAGuaUGUGCCCUCGG---CCCGcGGuaC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 28366 | 0.69 | 0.641821 |
Target: 5'- -aUAUAUACaGGGA-CCggGGGCGCCAUGu -3' miRNA: 3'- gaGUAUGUG-CCCUcGG--CCCGCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 62926 | 0.69 | 0.641821 |
Target: 5'- cCUCGUAC-CGcG-GCCGGGCGUCcgGa -3' miRNA: 3'- -GAGUAUGuGCcCuCGGCCCGCGGuaC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 28516 | 0.68 | 0.661933 |
Target: 5'- aCUCAgACGCaGGGcCCGGGguCGCCGUGg -3' miRNA: 3'- -GAGUaUGUGcCCUcGGCCC--GCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 100490 | 0.68 | 0.671958 |
Target: 5'- gUCAcccugcgGCGCGGcagcgaucGAGCCGGGCGgUAUGu -3' miRNA: 3'- gAGUa------UGUGCC--------CUCGGCCCGCgGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 4184 | 0.7 | 0.591542 |
Target: 5'- ----gGgGCGGGGGCCcGGCGCCGg- -3' miRNA: 3'- gaguaUgUGCCCUCGGcCCGCGGUac -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 31717 | 0.7 | 0.561662 |
Target: 5'- --gGUGCGUGGGAGUgGgGGUGCCAUGu -3' miRNA: 3'- gagUAUGUGCCCUCGgC-CCGCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 24115 | 0.71 | 0.532207 |
Target: 5'- ----cACGCGGGAccuggccuucGCCGGG-GCCGUGg -3' miRNA: 3'- gaguaUGUGCCCU----------CGGCCCgCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 111538 | 0.8 | 0.159041 |
Target: 5'- -aCGUACACGGGuGGCCGGGCGUUgggGUGg -3' miRNA: 3'- gaGUAUGUGCCC-UCGGCCCGCGG---UAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 28173 | 0.79 | 0.189256 |
Target: 5'- ----aGCGCGaggugaGGGGCCGGGCGCCAUGu -3' miRNA: 3'- gaguaUGUGC------CCUCGGCCCGCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 28210 | 0.75 | 0.297396 |
Target: 5'- -cCAUAUugGGGGGCgCcauauugggGGGCGCCAUGu -3' miRNA: 3'- gaGUAUGugCCCUCG-G---------CCCGCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 68088 | 0.75 | 0.311217 |
Target: 5'- -cCAccCACGcGAGCCGGGCGUCAUGg -3' miRNA: 3'- gaGUauGUGCcCUCGGCCCGCGGUAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 41823 | 0.74 | 0.355571 |
Target: 5'- --aAUACGCGGGGG-CGGGCGUCAg- -3' miRNA: 3'- gagUAUGUGCCCUCgGCCCGCGGUac -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 100395 | 0.74 | 0.363383 |
Target: 5'- ----gGCGCGGGGGCCgGGGUGCCcgAUGu -3' miRNA: 3'- gaguaUGUGCCCUCGG-CCCGCGG--UAC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 95945 | 0.72 | 0.46593 |
Target: 5'- uUCAU-CAUGGGGGCgGGGgGCUcgGg -3' miRNA: 3'- gAGUAuGUGCCCUCGgCCCgCGGuaC- -5' |
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5782 | 5' | -58.7 | NC_001806.1 | + | 1664 | 0.71 | 0.522509 |
Target: 5'- cCUCcucGCAgaagucCGGcGcGCCGGGCGCCAUGg -3' miRNA: 3'- -GAGua-UGU------GCC-CuCGGCCCGCGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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