miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5782 5' -58.7 NC_001806.1 + 24864 0.68 0.681951
Target:  5'- -cCGUGCugGcGGcGgCGGGgGCCGUGg -3'
miRNA:   3'- gaGUAUGugC-CCuCgGCCCgCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 62633 0.68 0.681951
Target:  5'- gCUCcagGCACGGGAGCgCcuGCGCCAc- -3'
miRNA:   3'- -GAGua-UGUGCCCUCG-GccCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 148683 0.68 0.685938
Target:  5'- -gCAUGCACGGGAaggugucgagcgcagGUgGGGCGCgAUc -3'
miRNA:   3'- gaGUAUGUGCCCU---------------CGgCCCGCGgUAc -5'
5782 5' -58.7 NC_001806.1 + 106847 0.68 0.691905
Target:  5'- -gCAUACGCggaguuuuucucGGGGGaCgCGGGCGCCGa- -3'
miRNA:   3'- gaGUAUGUG------------CCCUC-G-GCCCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 83661 0.68 0.691905
Target:  5'- -cCGUACcgacgGCGGGGuGcCCGGGCGgCAUGc -3'
miRNA:   3'- gaGUAUG-----UGCCCU-C-GGCCCGCgGUAC- -5'
5782 5' -58.7 NC_001806.1 + 33615 0.68 0.701811
Target:  5'- -aCcgGCGCGGG-GCgGGGgGCCGg- -3'
miRNA:   3'- gaGuaUGUGCCCuCGgCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 48049 0.67 0.71166
Target:  5'- gCUgGUGCGCagcgcggcuacgGaGGAGCCagGGGCGCCGUu -3'
miRNA:   3'- -GAgUAUGUG------------C-CCUCGG--CCCGCGGUAc -5'
5782 5' -58.7 NC_001806.1 + 2839 0.67 0.71166
Target:  5'- -gCGUGgAgGGGGGCgCGGGCGCgGg- -3'
miRNA:   3'- gaGUAUgUgCCCUCG-GCCCGCGgUac -5'
5782 5' -58.7 NC_001806.1 + 18310 0.67 0.71166
Target:  5'- -aCAUACAaGGGGGUCgGGGCGaCCGg- -3'
miRNA:   3'- gaGUAUGUgCCCUCGG-CCCGC-GGUac -5'
5782 5' -58.7 NC_001806.1 + 30410 0.67 0.721443
Target:  5'- -gCGgcuCGgGGGGGCCGGGCGUgGa- -3'
miRNA:   3'- gaGUau-GUgCCCUCGGCCCGCGgUac -5'
5782 5' -58.7 NC_001806.1 + 132649 0.67 0.721443
Target:  5'- cCUgGUGCGCGGG-GCCGcGGcCGCUu-- -3'
miRNA:   3'- -GAgUAUGUGCCCuCGGC-CC-GCGGuac -5'
5782 5' -58.7 NC_001806.1 + 109452 0.67 0.740778
Target:  5'- -cCGUGCGCGGGuugUGGGCGUCAa- -3'
miRNA:   3'- gaGUAUGUGCCCucgGCCCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 59045 0.67 0.740778
Target:  5'- cCUCc-ACGgGGGAGgCGGGgGCCAc- -3'
miRNA:   3'- -GAGuaUGUgCCCUCgGCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 23792 0.67 0.740778
Target:  5'- -----cCACGGGGccGCCGGGgGCCGc- -3'
miRNA:   3'- gaguauGUGCCCU--CGGCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 3339 0.67 0.740778
Target:  5'- cCUCcgGcCGCGGGgggcuggcgGGCCGGGCcccgGCCAg- -3'
miRNA:   3'- -GAGuaU-GUGCCC---------UCGGCCCG----CGGUac -5'
5782 5' -58.7 NC_001806.1 + 139817 0.67 0.740778
Target:  5'- aUCAUgGUACGGG-GCCGGgaGCGCCAg- -3'
miRNA:   3'- gAGUA-UGUGCCCuCGGCC--CGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 12978 0.67 0.759746
Target:  5'- uCUCGgACAgcucCGGGGGCagcaGGGUGCuCGUGu -3'
miRNA:   3'- -GAGUaUGU----GCCCUCGg---CCCGCG-GUAC- -5'
5782 5' -58.7 NC_001806.1 + 39202 0.67 0.759746
Target:  5'- gUC-UGCGuucuUGGGGGCCGGGCcccGCCGc- -3'
miRNA:   3'- gAGuAUGU----GCCCUCGGCCCG---CGGUac -5'
5782 5' -58.7 NC_001806.1 + 128275 0.66 0.768143
Target:  5'- gUCA-GCACGGcgcGAGCCGGGCcgacgacGCgAUGa -3'
miRNA:   3'- gAGUaUGUGCC---CUCGGCCCG-------CGgUAC- -5'
5782 5' -58.7 NC_001806.1 + 35271 0.66 0.76907
Target:  5'- ----cGCGCGGGAGUCguggcuuugGGGCGCaucCAUGg -3'
miRNA:   3'- gaguaUGUGCCCUCGG---------CCCGCG---GUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.