miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5784 3' -52.3 NC_001806.1 + 143330 0.67 0.971007
Target:  5'- aGggGggGGGGGGgcgcUGGuuGGUCaaaAAAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCa---GCC--CUAGg--UUUCC- -5'
5784 3' -52.3 NC_001806.1 + 93706 0.67 0.967989
Target:  5'- aGggGuuGGGGGGUgGGGGaaCCuAGGGc -3'
miRNA:   3'- -CuuCuuCUCCCCAgCCCUa-GGuUUCC- -5'
5784 3' -52.3 NC_001806.1 + 35048 0.68 0.961297
Target:  5'- nGGAGAGGGGGGGagaGGGGagCCAGu-- -3'
miRNA:   3'- -CUUCUUCUCCCCag-CCCUa-GGUUucc -5'
5784 3' -52.3 NC_001806.1 + 145237 0.68 0.959113
Target:  5'- -uAGAGGGGGGGgacccaaacgacaGGGGgcgccCCAGAGGc -3'
miRNA:   3'- cuUCUUCUCCCCag-----------CCCUa----GGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 151274 0.68 0.957612
Target:  5'- cGGGcGGuGGGGGcCGGGG-CCGGGGGg -3'
miRNA:   3'- cUUCuUC-UCCCCaGCCCUaGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 145546 0.68 0.957612
Target:  5'- -uGGggGGGGGGagugCGGGGga-GGGGGg -3'
miRNA:   3'- cuUCuuCUCCCCa---GCCCUaggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 127405 0.68 0.955289
Target:  5'- aGggGggGGGGGGgacggugauaguaaCGGGAUCgGAc-- -3'
miRNA:   3'- -CuuCuuCUCCCCa-------------GCCCUAGgUUucc -5'
5784 3' -52.3 NC_001806.1 + 4836 0.68 0.949538
Target:  5'- cGAGGccGcGGGGUCGGGcgucgggaucGUCCGGAcGGc -3'
miRNA:   3'- -CUUCuuCuCCCCAGCCC----------UAGGUUU-CC- -5'
5784 3' -52.3 NC_001806.1 + 44794 0.68 0.949538
Target:  5'- uGAGGGccGGGGGGGUCGccaGGAugUCCAGGa- -3'
miRNA:   3'- -CUUCU--UCUCCCCAGC---CCU--AGGUUUcc -5'
5784 3' -52.3 NC_001806.1 + 66543 0.68 0.949109
Target:  5'- cGAGGggGAagucGGGGUuucgguuUGGGG-CCGGGGGc -3'
miRNA:   3'- -CUUCuuCU----CCCCA-------GCCCUaGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 14222 0.68 0.945592
Target:  5'- gGggGggGGGGGGgaaauuauacgacaaCuGGGUCCAuguAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCa--------------GcCCUAGGUu--UCC- -5'
5784 3' -52.3 NC_001806.1 + 120322 0.68 0.945142
Target:  5'- gGggGAcGGGGcGGUCGGGggCgGcGGGu -3'
miRNA:   3'- -CuuCUuCUCC-CCAGCCCuaGgUuUCC- -5'
5784 3' -52.3 NC_001806.1 + 32026 0.69 0.940502
Target:  5'- uGggGcGGAGGGGUgGGGGg--GGGGGa -3'
miRNA:   3'- -CuuCuUCUCCCCAgCCCUaggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 25412 0.69 0.937599
Target:  5'- aGggGgcGAGGGG-CGGuGGUggugcgcgggcgcccCCGGAGGg -3'
miRNA:   3'- -CuuCuuCUCCCCaGCC-CUA---------------GGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 32858 0.69 0.935615
Target:  5'- uGAAGAAGGGGGGg-GGGAgaagCgAGaacAGGa -3'
miRNA:   3'- -CUUCUUCUCCCCagCCCUa---GgUU---UCC- -5'
5784 3' -52.3 NC_001806.1 + 45512 0.69 0.935615
Target:  5'- uGGGguGAGGGGUgGGGGU--GGAGGg -3'
miRNA:   3'- cUUCuuCUCCCCAgCCCUAggUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 111343 0.69 0.930481
Target:  5'- cGGGggGGGGGGUauauaaggccUGGGAUCCc---- -3'
miRNA:   3'- cUUCuuCUCCCCA----------GCCCUAGGuuucc -5'
5784 3' -52.3 NC_001806.1 + 54101 0.69 0.919468
Target:  5'- cGggGAGccgagcccgcauGGGGGGUguccCGGGGcCCAGGGGc -3'
miRNA:   3'- -CuuCUU------------CUCCCCA----GCCCUaGGUUUCC- -5'
5784 3' -52.3 NC_001806.1 + 30527 0.69 0.919468
Target:  5'- cGAGGAAGAGgcgcGGGUCGGG--CCAGGa- -3'
miRNA:   3'- -CUUCUUCUC----CCCAGCCCuaGGUUUcc -5'
5784 3' -52.3 NC_001806.1 + 4988 0.69 0.913589
Target:  5'- cGAGucguGGGGGuGGUCGGGGUCguGgucGGGg -3'
miRNA:   3'- cUUCu---UCUCC-CCAGCCCUAGguU---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.