miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 64901 0.66 0.95124
Target:  5'- -gACCAGCGCCgGCCuCUGGCGuCGGCg -3'
miRNA:   3'- ugUGGUUGUGG-UGGuGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 46428 0.66 0.968102
Target:  5'- uGCGCCGcggucggGCGCCugGCgGCCAugcaugcccggaugGCGGCGGUc -3'
miRNA:   3'- -UGUGGU-------UGUGG--UGgUGGU--------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 54081 0.66 0.959178
Target:  5'- gACGCCAACccagGCCGCgGCgGGgAGCcgAGCc -3'
miRNA:   3'- -UGUGGUUG----UGGUGgUGgUUgUCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 68640 0.66 0.966178
Target:  5'- cCGCUGGCaaACCGUCACCAAgAGCuGCu -3'
miRNA:   3'- uGUGGUUG--UGGUGGUGGUUgUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 23905 0.66 0.95493
Target:  5'- uGCugUAcuCGCCGCUGCCGGgcgaggaccuggcCGGCGGCg -3'
miRNA:   3'- -UGugGUu-GUGGUGGUGGUU-------------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 97348 0.66 0.95124
Target:  5'- cGCGCgCGACcUCACCACCAaggcccgggccACGGC-GCc -3'
miRNA:   3'- -UGUG-GUUGuGGUGGUGGU-----------UGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 136343 0.66 0.961732
Target:  5'- -gGCCAGCGCCAgCucaaaaaacccgggGCCGGCGcgcuccGCGGCc -3'
miRNA:   3'- ugUGGUUGUGGUgG--------------UGGUUGU------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 46163 0.66 0.966178
Target:  5'- cACACC--CACCACCGCCcccCGGgccccccgaaccCAGCg -3'
miRNA:   3'- -UGUGGuuGUGGUGGUGGuu-GUC------------GUCG- -5'
5788 3' -53.3 NC_001806.1 + 112612 0.66 0.967469
Target:  5'- -gACguGgGCCGCCACCuGCuggagaugcaggaggAGCAGCu -3'
miRNA:   3'- ugUGguUgUGGUGGUGGuUG---------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 32982 0.66 0.95124
Target:  5'- cCGCCGGgGCCccgggccggGCCGCC-ACGGgGGCc -3'
miRNA:   3'- uGUGGUUgUGG---------UGGUGGuUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 14265 0.66 0.955328
Target:  5'- gAUGgUAACGCCcCCACCcGCGGCAcGUa -3'
miRNA:   3'- -UGUgGUUGUGGuGGUGGuUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 132737 0.67 0.932429
Target:  5'- gGC-CCGGCGugGCC-UCGGCGGCAGCc -3'
miRNA:   3'- -UGuGGUUGUggUGGuGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 125841 0.67 0.932429
Target:  5'- cGCGCCGcggGCccccgGCCGCCGCgGACGccGUGGCg -3'
miRNA:   3'- -UGUGGU---UG-----UGGUGGUGgUUGU--CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 125006 0.67 0.932429
Target:  5'- gGCAuCCGGCGCCACCuccgcaaucCCAAgauuCGGCGcGCg -3'
miRNA:   3'- -UGU-GGUUGUGGUGGu--------GGUU----GUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 122989 0.67 0.946909
Target:  5'- gGCACUcguagGGCAUCGCCGCCcAUGGUgaGGCc -3'
miRNA:   3'- -UGUGG-----UUGUGGUGGUGGuUGUCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 47414 0.67 0.937505
Target:  5'- -gACCAACGCCgACCugUAcCGGgAGUg -3'
miRNA:   3'- ugUGGUUGUGG-UGGugGUuGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 10529 0.67 0.937505
Target:  5'- cCACCAGgACCACCgagGCCAcuuGGCgAGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG---UGGUug-UCG-UCG- -5'
5788 3' -53.3 NC_001806.1 + 42615 0.67 0.946909
Target:  5'- cGCGCCcugauCAUaCugCGCCG-CGGCGGCg -3'
miRNA:   3'- -UGUGGuu---GUG-GugGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 129664 0.67 0.932429
Target:  5'- uGCGCCcGC-CCggGCCGCCG--AGCGGCc -3'
miRNA:   3'- -UGUGGuUGuGG--UGGUGGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 46223 0.67 0.932429
Target:  5'- gGCcCCGGCGgCggagACCACCcGCGGCAGg -3'
miRNA:   3'- -UGuGGUUGUgG----UGGUGGuUGUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.