miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 22890 0.67 0.942332
Target:  5'- -gGCCGGgGCCcggcCCGCCAGCcccccGCGGCc -3'
miRNA:   3'- ugUGGUUgUGGu---GGUGGUUGu----CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 121320 0.67 0.942332
Target:  5'- --cCCGAC-CCaACCACCgAACAGCucGCg -3'
miRNA:   3'- uguGGUUGuGG-UGGUGG-UUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 116137 0.67 0.937505
Target:  5'- gGCAUCucGCGCC-CCGau-GCGGCGGCg -3'
miRNA:   3'- -UGUGGu-UGUGGuGGUgguUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 126029 0.67 0.942332
Target:  5'- aACGCCAGC-CUGCgGCCGGauguacagucuuCGGCGGUg -3'
miRNA:   3'- -UGUGGUUGuGGUGgUGGUU------------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 85941 0.67 0.937505
Target:  5'- -gGCCAGC-UCGgaCACCAGCAGCuuGCg -3'
miRNA:   3'- ugUGGUUGuGGUg-GUGGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 70466 0.67 0.942332
Target:  5'- aGCgACgGGCGCCGCCugUAuGCGGUGGUc -3'
miRNA:   3'- -UG-UGgUUGUGGUGGugGU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 73250 0.67 0.937505
Target:  5'- cCACCcaAACGugGCCGCC-ACGGCGGUu -3'
miRNA:   3'- uGUGG--UUGUggUGGUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 21850 0.67 0.942332
Target:  5'- -gGCC-GCGCCcaaGCCcCgGGCGGCGGCg -3'
miRNA:   3'- ugUGGuUGUGG---UGGuGgUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 39150 0.67 0.94091
Target:  5'- aGCGCCcgcaGACGCCcgacagccccuuggAUCGCCccggGGCGGCGGCc -3'
miRNA:   3'- -UGUGG----UUGUGG--------------UGGUGG----UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 37906 0.67 0.942332
Target:  5'- cGCGCC-ACGCC-UCGCCAugGG-GGCg -3'
miRNA:   3'- -UGUGGuUGUGGuGGUGGUugUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 2123 0.67 0.9271
Target:  5'- gGCcCCGGCgaagGCCAggucCCGCguggaCAGCAGCAGCa -3'
miRNA:   3'- -UGuGGUUG----UGGU----GGUG-----GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 15552 0.67 0.9271
Target:  5'- cGCAaaCAGCACCGCCcCCAgGgGGCGGUc -3'
miRNA:   3'- -UGUg-GUUGUGGUGGuGGU-UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3172 0.67 0.9271
Target:  5'- gGCGC--GCACgGCgGCC-ACGGCGGCc -3'
miRNA:   3'- -UGUGguUGUGgUGgUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 52092 0.67 0.937505
Target:  5'- --cCCAGCGgCACgACCGGCuccauGCAGUg -3'
miRNA:   3'- uguGGUUGUgGUGgUGGUUGu----CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 8764 0.67 0.942332
Target:  5'- uGCGUCGACGCCuuaaUACCGACuguuGGCGGCc -3'
miRNA:   3'- -UGUGGUUGUGGug--GUGGUUG----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 79096 0.67 0.940431
Target:  5'- cCGCCAGCGCCACCGacgaggaccccuuCCucGCgcgagcuauccucgGGCGGCc -3'
miRNA:   3'- uGUGGUUGUGGUGGU-------------GGu-UG--------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 56478 0.67 0.939466
Target:  5'- -gGCCAcCGCCACauggccuccgagaaaCACCuggggccACAGCGGCa -3'
miRNA:   3'- ugUGGUuGUGGUG---------------GUGGu------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 75261 0.67 0.942332
Target:  5'- -gGCCcugGGCGCgGCCGCCAGCGaccCGGCc -3'
miRNA:   3'- ugUGG---UUGUGgUGGUGGUUGUc--GUCG- -5'
5788 3' -53.3 NC_001806.1 + 139367 0.67 0.942332
Target:  5'- -gGCCAugGCCAUaaaCGCCGACuaCGGCa -3'
miRNA:   3'- ugUGGUugUGGUG---GUGGUUGucGUCG- -5'
5788 3' -53.3 NC_001806.1 + 65590 0.67 0.942332
Target:  5'- aGCACCAucACGCCAUUgACUcGCuGGCAGUa -3'
miRNA:   3'- -UGUGGU--UGUGGUGG-UGGuUG-UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.