miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 15552 0.67 0.9271
Target:  5'- cGCAaaCAGCACCGCCcCCAgGgGGCGGUc -3'
miRNA:   3'- -UGUg-GUUGUGGUGGuGGU-UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 35563 0.67 0.9271
Target:  5'- cGCGcCCGGCGCCG-CGCCGAacgacgugcGCAGCg -3'
miRNA:   3'- -UGU-GGUUGUGGUgGUGGUUgu-------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 102410 0.67 0.925452
Target:  5'- gACGCCAGCGCUccguguucguagcgGCCcCCGcCGGCcGCg -3'
miRNA:   3'- -UGUGGUUGUGG--------------UGGuGGUuGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 70132 0.67 0.9271
Target:  5'- cGCGCUGAuCACCcuccucgaaccgGCCGCCcGgGGCGGCc -3'
miRNA:   3'- -UGUGGUU-GUGG------------UGGUGGuUgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 129664 0.67 0.932429
Target:  5'- uGCGCCcGC-CCggGCCGCCG--AGCGGCc -3'
miRNA:   3'- -UGUGGuUGuGG--UGGUGGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 125841 0.67 0.932429
Target:  5'- cGCGCCGcggGCccccgGCCGCCGCgGACGccGUGGCg -3'
miRNA:   3'- -UGUGGU---UG-----UGGUGGUGgUUGU--CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 47414 0.67 0.937505
Target:  5'- -gACCAACGCCgACCugUAcCGGgAGUg -3'
miRNA:   3'- ugUGGUUGUGG-UGGugGUuGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 39454 0.67 0.942332
Target:  5'- -aACCAGguuuUGCCGCUggACCGACAGCucGCa -3'
miRNA:   3'- ugUGGUU----GUGGUGG--UGGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 134678 0.67 0.94091
Target:  5'- cCGCCAcCGCgaaGCCGCgAuaacuggacuggccGCAGCAGCg -3'
miRNA:   3'- uGUGGUuGUGg--UGGUGgU--------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 21850 0.67 0.942332
Target:  5'- -gGCC-GCGCCcaaGCCcCgGGCGGCGGCg -3'
miRNA:   3'- ugUGGuUGUGG---UGGuGgUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 75261 0.67 0.942332
Target:  5'- -gGCCcugGGCGCgGCCGCCAGCGaccCGGCc -3'
miRNA:   3'- ugUGG---UUGUGgUGGUGGUUGUc--GUCG- -5'
5788 3' -53.3 NC_001806.1 + 126029 0.67 0.942332
Target:  5'- aACGCCAGC-CUGCgGCCGGauguacagucuuCGGCGGUg -3'
miRNA:   3'- -UGUGGUUGuGGUGgUGGUU------------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 37906 0.67 0.942332
Target:  5'- cGCGCC-ACGCC-UCGCCAugGG-GGCg -3'
miRNA:   3'- -UGUGGuUGUGGuGGUGGUugUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 56478 0.67 0.939466
Target:  5'- -gGCCAcCGCCACauggccuccgagaaaCACCuggggccACAGCGGCa -3'
miRNA:   3'- ugUGGUuGUGGUG---------------GUGGu------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 116137 0.67 0.937505
Target:  5'- gGCAUCucGCGCC-CCGau-GCGGCGGCg -3'
miRNA:   3'- -UGUGGu-UGUGGuGGUgguUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 73250 0.67 0.937505
Target:  5'- cCACCcaAACGugGCCGCC-ACGGCGGUu -3'
miRNA:   3'- uGUGG--UUGUggUGGUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 85941 0.67 0.937505
Target:  5'- -gGCCAGC-UCGgaCACCAGCAGCuuGCg -3'
miRNA:   3'- ugUGGUUGuGGUg-GUGGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 147670 0.67 0.937505
Target:  5'- -gGCCGGCuCCGCC-CCGGgGGCcggGGCg -3'
miRNA:   3'- ugUGGUUGuGGUGGuGGUUgUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 97446 0.67 0.932429
Target:  5'- aGCGCCcgucggucuGCACCAUgACCAAgUGGCAGg -3'
miRNA:   3'- -UGUGGu--------UGUGGUGgUGGUU-GUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 132737 0.67 0.932429
Target:  5'- gGC-CCGGCGugGCC-UCGGCGGCAGCc -3'
miRNA:   3'- -UGuGGUUGUggUGGuGGUUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.