miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 22753 0.67 0.944192
Target:  5'- cACGCCGACGCCGacgacgaCGCCGGgcgccgcgcccaggcCGGCcGCg -3'
miRNA:   3'- -UGUGGUUGUGGUg------GUGGUU---------------GUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 73250 0.67 0.937505
Target:  5'- cCACCcaAACGugGCCGCC-ACGGCGGUu -3'
miRNA:   3'- uGUGG--UUGUggUGGUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 56478 0.67 0.939466
Target:  5'- -gGCCAcCGCCACauggccuccgagaaaCACCuggggccACAGCGGCa -3'
miRNA:   3'- ugUGGUuGUGGUG---------------GUGGu------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 10529 0.67 0.937505
Target:  5'- cCACCAGgACCACCgagGCCAcuuGGCgAGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG---UGGUug-UCG-UCG- -5'
5788 3' -53.3 NC_001806.1 + 116137 0.67 0.937505
Target:  5'- gGCAUCucGCGCC-CCGau-GCGGCGGCg -3'
miRNA:   3'- -UGUGGu-UGUGGuGGUgguUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 38058 0.67 0.946909
Target:  5'- gACGCCcacGGCGuCCGCCGCgGGCAGgCugGGCu -3'
miRNA:   3'- -UGUGG---UUGU-GGUGGUGgUUGUC-G--UCG- -5'
5788 3' -53.3 NC_001806.1 + 131194 0.67 0.946909
Target:  5'- -gACCAcaGCGCCugCcggACCcACAgGCAGCu -3'
miRNA:   3'- ugUGGU--UGUGGugG---UGGuUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 147670 0.67 0.937505
Target:  5'- -gGCCGGCuCCGCC-CCGGgGGCcggGGCg -3'
miRNA:   3'- ugUGGUUGuGGUGGuGGUUgUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 68283 0.68 0.89669
Target:  5'- -gGCCAAgcUGCgCGCCGCC-AUGGCGGCg -3'
miRNA:   3'- ugUGGUU--GUG-GUGGUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 112089 0.68 0.921518
Target:  5'- uCGCCAguuGCG-CGCCAuCCAACAGCucGCu -3'
miRNA:   3'- uGUGGU---UGUgGUGGU-GGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 110941 0.68 0.894668
Target:  5'- gGCGCCGGCcuguauccugGCCGCCAUCGuCGGCuacuacguuacgugGGCg -3'
miRNA:   3'- -UGUGGUUG----------UGGUGGUGGUuGUCG--------------UCG- -5'
5788 3' -53.3 NC_001806.1 + 81936 0.68 0.915088
Target:  5'- gGCcCCGuACGCCucccgggACCGCCGGguuCGGCGGCg -3'
miRNA:   3'- -UGuGGU-UGUGG-------UGGUGGUU---GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4284 0.68 0.915685
Target:  5'- cCGCCGGgGCUGCCcgGCCGugAaGCGGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG--UGGUugU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 5866 0.68 0.915685
Target:  5'- cCGCCgGACGCCGggACCAACGGgaCGGCg -3'
miRNA:   3'- uGUGG-UUGUGGUggUGGUUGUC--GUCG- -5'
5788 3' -53.3 NC_001806.1 + 46304 0.68 0.915685
Target:  5'- gGCGCCAACccgauCCAagaCACCcgcGCAGgGGCu -3'
miRNA:   3'- -UGUGGUUGu----GGUg--GUGGu--UGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 75306 0.68 0.915685
Target:  5'- --cCUAGCgGCCAUgGCCGACAGCGccGCg -3'
miRNA:   3'- uguGGUUG-UGGUGgUGGUUGUCGU--CG- -5'
5788 3' -53.3 NC_001806.1 + 85173 0.68 0.915685
Target:  5'- aACGCgGGagacgggcgguuCGCCGCCACCAGCcGCgaGGCc -3'
miRNA:   3'- -UGUGgUU------------GUGGUGGUGGUUGuCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 95196 0.68 0.915685
Target:  5'- cGCGCguGCuacgACCACCACCuGACGacgccgcucuuGCGGCg -3'
miRNA:   3'- -UGUGguUG----UGGUGGUGG-UUGU-----------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4063 0.68 0.915685
Target:  5'- gGCGCCcACACgGCCGCCGG-GGC-GCc -3'
miRNA:   3'- -UGUGGuUGUGgUGGUGGUUgUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 103107 0.68 0.915685
Target:  5'- gAUAUCGACggggagcucgGCCGCCugC-AUGGCGGCg -3'
miRNA:   3'- -UGUGGUUG----------UGGUGGugGuUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.