miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 24558 0.68 0.909602
Target:  5'- cCACCGACGCCAUggCGCC--CGGCGcGCc -3'
miRNA:   3'- uGUGGUUGUGGUG--GUGGuuGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 74395 0.68 0.909602
Target:  5'- -gACgGACGCCGCCaACCAAgGGCuGa -3'
miRNA:   3'- ugUGgUUGUGGUGG-UGGUUgUCGuCg -5'
5788 3' -53.3 NC_001806.1 + 85173 0.68 0.915685
Target:  5'- aACGCgGGagacgggcgguuCGCCGCCACCAGCcGCgaGGCc -3'
miRNA:   3'- -UGUGgUU------------GUGGUGGUGGUUGuCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 95196 0.68 0.915685
Target:  5'- cGCGCguGCuacgACCACCACCuGACGacgccgcucuuGCGGCg -3'
miRNA:   3'- -UGUGguUG----UGGUGGUGG-UUGU-----------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 4063 0.68 0.915685
Target:  5'- gGCGCCcACACgGCCGCCGG-GGC-GCc -3'
miRNA:   3'- -UGUGGuUGUGgUGGUGGUUgUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 22058 0.68 0.915685
Target:  5'- gGC-CCGGCGCCGggcccCCGCCcccggGGCGGguGCu -3'
miRNA:   3'- -UGuGGUUGUGGU-----GGUGG-----UUGUCguCG- -5'
5788 3' -53.3 NC_001806.1 + 103107 0.68 0.915685
Target:  5'- gAUAUCGACggggagcucgGCCGCCugC-AUGGCGGCg -3'
miRNA:   3'- -UGUGGUUG----------UGGUGGugGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 112089 0.68 0.921518
Target:  5'- uCGCCAguuGCG-CGCCAuCCAACAGCucGCu -3'
miRNA:   3'- uGUGGU---UGUgGUGGU-GGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 37600 0.68 0.921518
Target:  5'- cCGCCAGCACCgggGCCcagggGCUAuucGCGGCGGg -3'
miRNA:   3'- uGUGGUUGUGG---UGG-----UGGU---UGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 143872 0.68 0.921518
Target:  5'- cCACCGACACCcCCACCc-CAGUc-- -3'
miRNA:   3'- uGUGGUUGUGGuGGUGGuuGUCGucg -5'
5788 3' -53.3 NC_001806.1 + 75306 0.68 0.915685
Target:  5'- --cCUAGCgGCCAUgGCCGACAGCGccGCg -3'
miRNA:   3'- uguGGUUG-UGGUGgUGGUUGUCGU--CG- -5'
5788 3' -53.3 NC_001806.1 + 4284 0.68 0.915685
Target:  5'- cCGCCGGgGCUGCCcgGCCGugAaGCGGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG--UGGUugU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 123827 0.68 0.909602
Target:  5'- cCACCGAUccgGCCuCCGCgAGCGGCuucGCg -3'
miRNA:   3'- uGUGGUUG---UGGuGGUGgUUGUCGu--CG- -5'
5788 3' -53.3 NC_001806.1 + 124963 0.68 0.909602
Target:  5'- -gGCCGAgACCAaCACCcACGGCcuGGCg -3'
miRNA:   3'- ugUGGUUgUGGUgGUGGuUGUCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 131587 0.68 0.909602
Target:  5'- cCACCGG-GCC-CgGCCAggcACGGCAGCa -3'
miRNA:   3'- uGUGGUUgUGGuGgUGGU---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 151014 0.68 0.909602
Target:  5'- -gGCCGAgGCCcagACCACCA--GGUGGCg -3'
miRNA:   3'- ugUGGUUgUGG---UGGUGGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 151536 0.68 0.909602
Target:  5'- gGCGCCcguGgGCCcggGCgGCCGGgGGCGGCg -3'
miRNA:   3'- -UGUGGu--UgUGG---UGgUGGUUgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 112768 0.68 0.913886
Target:  5'- cGCAUCu-CGCCGCCACCAACguucccuacccccuGGUGGg -3'
miRNA:   3'- -UGUGGuuGUGGUGGUGGUUG--------------UCGUCg -5'
5788 3' -53.3 NC_001806.1 + 84049 0.68 0.915088
Target:  5'- uCGCCGGCACCcCCGCCGucugggagucgggGCcccAGCuGCg -3'
miRNA:   3'- uGUGGUUGUGGuGGUGGU-------------UG---UCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 81936 0.68 0.915088
Target:  5'- gGCcCCGuACGCCucccgggACCGCCGGguuCGGCGGCg -3'
miRNA:   3'- -UGuGGU-UGUGG-------UGGUGGUU---GUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.