miRNA display CGI


Results 141 - 160 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 5866 0.68 0.915685
Target:  5'- cCGCCgGACGCCGggACCAACGGgaCGGCg -3'
miRNA:   3'- uGUGG-UUGUGGUggUGGUUGUC--GUCG- -5'
5788 3' -53.3 NC_001806.1 + 81936 0.68 0.915088
Target:  5'- gGCcCCGuACGCCucccgggACCGCCGGguuCGGCGGCg -3'
miRNA:   3'- -UGuGGU-UGUGG-------UGGUGGUU---GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 98480 0.68 0.903269
Target:  5'- aGguCCAGCGCCGCaACCAGCuGCAcgaccuGCg -3'
miRNA:   3'- -UguGGUUGUGGUGgUGGUUGuCGU------CG- -5'
5788 3' -53.3 NC_001806.1 + 26799 0.69 0.860235
Target:  5'- aGCACCuggcGCGCCugCGCCugcGACGcGCGGg -3'
miRNA:   3'- -UGUGGu---UGUGGugGUGG---UUGU-CGUCg -5'
5788 3' -53.3 NC_001806.1 + 119629 0.69 0.889867
Target:  5'- gGCcCCAGCGCC-CCACgGGCccGGgGGCg -3'
miRNA:   3'- -UGuGGUUGUGGuGGUGgUUG--UCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 102810 0.69 0.859448
Target:  5'- gUACCAggucccgaACACCACCcCCGACGagccggucgccccGCGGCc -3'
miRNA:   3'- uGUGGU--------UGUGGUGGuGGUUGU-------------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 10710 0.69 0.852268
Target:  5'- -gGCguACGCCAUCGCCAGCGGgaccggAGCg -3'
miRNA:   3'- ugUGguUGUGGUGGUGGUUGUCg-----UCG- -5'
5788 3' -53.3 NC_001806.1 + 93003 0.69 0.85146
Target:  5'- uCGCCAGCugcaACCugCugCGGCccgucauGGCGGCg -3'
miRNA:   3'- uGUGGUUG----UGGugGugGUUG-------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 101849 0.69 0.889867
Target:  5'- cGCACCAGCGCCGCCu-----GGCGGg -3'
miRNA:   3'- -UGUGGUUGUGGUGGugguugUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 52019 0.69 0.860235
Target:  5'- uCGCCggUuCCucCCGCuCGGCGGCAGCc -3'
miRNA:   3'- uGUGGuuGuGGu-GGUG-GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 96373 0.69 0.867984
Target:  5'- uGCGCCAggGCGCCcCCGC--GCGGgGGCg -3'
miRNA:   3'- -UGUGGU--UGUGGuGGUGguUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 1549 0.69 0.882806
Target:  5'- -gGCCcGCGCCACCggGCCGGgcCGGCGcGCa -3'
miRNA:   3'- ugUGGuUGUGGUGG--UGGUU--GUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 122718 0.69 0.882806
Target:  5'- uACGCUgaGGCACCACguCCGcCGGCGcGCa -3'
miRNA:   3'- -UGUGG--UUGUGGUGguGGUuGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 34718 0.69 0.882087
Target:  5'- -aACCcGCACCACCAgCAcggguugGgGGUAGCa -3'
miRNA:   3'- ugUGGuUGUGGUGGUgGU-------UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 6134 0.69 0.880641
Target:  5'- cGCgACCGACGCCcgcagacggcgccgGCCACgaaCGACGGgAGCg -3'
miRNA:   3'- -UG-UGGUUGUGG--------------UGGUG---GUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 147163 0.69 0.87551
Target:  5'- gGCACCGACgGCC-CCGCCcgaggaGGCGGaAGCg -3'
miRNA:   3'- -UGUGGUUG-UGGuGGUGG------UUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 23196 0.69 0.87551
Target:  5'- -aGCCuGCGCCcCCuGCUGGCGGCGGCn -3'
miRNA:   3'- ugUGGuUGUGGuGG-UGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2397 0.69 0.87551
Target:  5'- cGCAUCcAgGCCGCCAUgCGGC-GCAGCg -3'
miRNA:   3'- -UGUGGuUgUGGUGGUG-GUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1919 0.69 0.867984
Target:  5'- gGC-CCGAgGCCAgCACCGu--GCGGCg -3'
miRNA:   3'- -UGuGGUUgUGGUgGUGGUuguCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 24197 0.69 0.874767
Target:  5'- aACACCGugcGCGCCugcgacuggcCCGCCGACGggcccgcggugucGCGGCa -3'
miRNA:   3'- -UGUGGU---UGUGGu---------GGUGGUUGU-------------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.