miRNA display CGI


Results 61 - 80 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 21490 0.73 0.670825
Target:  5'- -aGCCGACGCCGCCGgCGACcgGGCcccGGCc -3'
miRNA:   3'- ugUGGUUGUGGUGGUgGUUG--UCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 51892 0.73 0.670825
Target:  5'- cGC-CCAGCACCGaCACCGcACuGCGGCu -3'
miRNA:   3'- -UGuGGUUGUGGUgGUGGU-UGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 122874 0.73 0.670825
Target:  5'- cCGCC-GCGCCACgGCCGagaAgAGCGGCg -3'
miRNA:   3'- uGUGGuUGUGGUGgUGGU---UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 50663 0.73 0.681259
Target:  5'- cGCACCGGCGCCGggACgAcGCGGCGGCc -3'
miRNA:   3'- -UGUGGUUGUGGUggUGgU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 103789 0.73 0.681259
Target:  5'- uGCugCAgacccccggGCGgCGCCGCCG-CGGCGGCg -3'
miRNA:   3'- -UGugGU---------UGUgGUGGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 20020 0.73 0.681259
Target:  5'- gAUGCCGACGCCGuCCGcuCCGACGGCccucuGCg -3'
miRNA:   3'- -UGUGGUUGUGGU-GGU--GGUUGUCGu----CG- -5'
5788 3' -53.3 NC_001806.1 + 33334 0.73 0.681259
Target:  5'- uCGCCGACGCCccuugGCCGCCc-CGGCuGCa -3'
miRNA:   3'- uGUGGUUGUGG-----UGGUGGuuGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 41431 0.73 0.681259
Target:  5'- cGCGCCGuggucgggguGCGCCGCCGCUu-CGGCGGa -3'
miRNA:   3'- -UGUGGU----------UGUGGUGGUGGuuGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 88982 0.73 0.69165
Target:  5'- gGCGCgAGCGCCGCgGCCAGaAGCcGCc -3'
miRNA:   3'- -UGUGgUUGUGGUGgUGGUUgUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 2081 0.73 0.670825
Target:  5'- cCGCCGGuCGCCGgCGCUGGCgAGCAGCc -3'
miRNA:   3'- uGUGGUU-GUGGUgGUGGUUG-UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1817 0.73 0.670825
Target:  5'- aGCGCaCGuuGCCGCCGCggcacaggcgCAGCGGCGGCg -3'
miRNA:   3'- -UGUG-GUugUGGUGGUG----------GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 119111 0.73 0.69165
Target:  5'- --cCCAACACgCGCUacgcgGCCGACAGCAcGCg -3'
miRNA:   3'- uguGGUUGUG-GUGG-----UGGUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 24162 0.73 0.649867
Target:  5'- uCGCCAGCGCCgGCgACCGGCGGCu-- -3'
miRNA:   3'- uGUGGUUGUGG-UGgUGGUUGUCGucg -5'
5788 3' -53.3 NC_001806.1 + 139836 0.73 0.649867
Target:  5'- aGCGCCAGgACCGCCuGCCGcGCGGaGGCg -3'
miRNA:   3'- -UGUGGUUgUGGUGG-UGGU-UGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 22357 0.73 0.660358
Target:  5'- aACAgCAGCuccuUCAUCACCGGCAGCguGGCg -3'
miRNA:   3'- -UGUgGUUGu---GGUGGUGGUUGUCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 75930 0.73 0.660358
Target:  5'- -aACCAGCGCCACC-CCAugcuccccccGCucGCAGCc -3'
miRNA:   3'- ugUGGUUGUGGUGGuGGU----------UGu-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 22616 0.73 0.660358
Target:  5'- cCGCCGuCGCCGCCGCCGcACcgGGCgAGCg -3'
miRNA:   3'- uGUGGUuGUGGUGGUGGU-UG--UCG-UCG- -5'
5788 3' -53.3 NC_001806.1 + 97301 0.73 0.66978
Target:  5'- cACACCAGCuaCGCCGCCGACcgcuucaAGCAGg -3'
miRNA:   3'- -UGUGGUUGugGUGGUGGUUG-------UCGUCg -5'
5788 3' -53.3 NC_001806.1 + 2315 0.73 0.66978
Target:  5'- -gGCCc-CGCCGCCGgccagguccucgcCCGGCAGCGGCg -3'
miRNA:   3'- ugUGGuuGUGGUGGU-------------GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 37231 0.73 0.670825
Target:  5'- cCGCCAGaCGCCGCCGCgAACA-CAGUu -3'
miRNA:   3'- uGUGGUU-GUGGUGGUGgUUGUcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.