Results 81 - 100 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 37231 | 0.73 | 0.670825 |
Target: 5'- cCGCCAGaCGCCGCCGCgAACA-CAGUu -3' miRNA: 3'- uGUGGUU-GUGGUGGUGgUUGUcGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 86538 | 0.72 | 0.72247 |
Target: 5'- gACGCCGAUguACUuuuucuugGCgAUCAGCAGCAGCu -3' miRNA: 3'- -UGUGGUUG--UGG--------UGgUGGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 26380 | 0.72 | 0.72247 |
Target: 5'- gGC-CCGcCGCCGCCGCCAuc-GCGGCc -3' miRNA: 3'- -UGuGGUuGUGGUGGUGGUuguCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 147435 | 0.72 | 0.730575 |
Target: 5'- cGCGCCucuuccucggacGCACCGCCGCCuccuGCucgacagaGGCGGCg -3' miRNA: 3'- -UGUGGu-----------UGUGGUGGUGGu---UG--------UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 5142 | 0.72 | 0.732592 |
Target: 5'- --uCCGACGCCAUCGCCGAUGcGgGGCg -3' miRNA: 3'- uguGGUUGUGGUGGUGGUUGU-CgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 50695 | 0.72 | 0.741625 |
Target: 5'- cGCGCCAuucugGCCGCCGggcucguCCuGCAGCGGCu -3' miRNA: 3'- -UGUGGUug---UGGUGGU-------GGuUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 78614 | 0.72 | 0.742624 |
Target: 5'- -uGCCGGcCGCCGCCACCcaccGCAcccccGCGGCg -3' miRNA: 3'- ugUGGUU-GUGGUGGUGGu---UGU-----CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 84805 | 0.72 | 0.742624 |
Target: 5'- gACACCGACccCCAUCGCC-GCGGCuccGGCc -3' miRNA: 3'- -UGUGGUUGu-GGUGGUGGuUGUCG---UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 145754 | 0.72 | 0.742624 |
Target: 5'- cACACCAACcCCACguCCccCGGCGGUc -3' miRNA: 3'- -UGUGGUUGuGGUGguGGuuGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 9661 | 0.72 | 0.72247 |
Target: 5'- cCGCCAggcACGCCugCGCCAACAGg--- -3' miRNA: 3'- uGUGGU---UGUGGugGUGGUUGUCgucg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 69573 | 0.72 | 0.72247 |
Target: 5'- gGCGCCAGCGagcaCACgCACgGGCGGCucuGCg -3' miRNA: 3'- -UGUGGUUGUg---GUG-GUGgUUGUCGu--CG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 56991 | 0.72 | 0.72247 |
Target: 5'- aGCACCAGgAgCGCCGCaua-GGCGGCg -3' miRNA: 3'- -UGUGGUUgUgGUGGUGguugUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 91691 | 0.72 | 0.701988 |
Target: 5'- uCGCCAGCGCCGCCcgcggaGCCAuCGGCGu- -3' miRNA: 3'- uGUGGUUGUGGUGG------UGGUuGUCGUcg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 100483 | 0.72 | 0.701988 |
Target: 5'- gGCACCGGuCACC-CUGCgGcGCGGCAGCg -3' miRNA: 3'- -UGUGGUU-GUGGuGGUGgU-UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 133614 | 0.72 | 0.701988 |
Target: 5'- -gGCCAGCGaccccuugccccCCACUGCCuuccGCGGCGGCg -3' miRNA: 3'- ugUGGUUGU------------GGUGGUGGu---UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 3696 | 0.72 | 0.712265 |
Target: 5'- cCGUCAGCGCCGCguucucgcgCGCCAACAGgGGCg -3' miRNA: 3'- uGUGGUUGUGGUG---------GUGGUUGUCgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 133042 | 0.72 | 0.712265 |
Target: 5'- gACACgugCAACGCCugcCCugCGcuGCGGCAGCu -3' miRNA: 3'- -UGUG---GUUGUGGu--GGugGU--UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 23512 | 0.72 | 0.712265 |
Target: 5'- cGCGCCGGC-CCGCCGagggccCCGACccccugGGCGGCu -3' miRNA: 3'- -UGUGGUUGuGGUGGU------GGUUG------UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 56380 | 0.72 | 0.716356 |
Target: 5'- aACACCAAC-CCgagguugaugACCugCAguccggcgugaacaaACAGCAGCg -3' miRNA: 3'- -UGUGGUUGuGG----------UGGugGU---------------UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 24522 | 0.72 | 0.742624 |
Target: 5'- -uGCCGGCGCUggACgGCCGgGCGGCGGCc -3' miRNA: 3'- ugUGGUUGUGG--UGgUGGU-UGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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