miRNA display CGI


Results 101 - 120 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 133614 0.72 0.701988
Target:  5'- -gGCCAGCGaccccuugccccCCACUGCCuuccGCGGCGGCg -3'
miRNA:   3'- ugUGGUUGU------------GGUGGUGGu---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3696 0.72 0.712265
Target:  5'- cCGUCAGCGCCGCguucucgcgCGCCAACAGgGGCg -3'
miRNA:   3'- uGUGGUUGUGGUG---------GUGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 133042 0.72 0.712265
Target:  5'- gACACgugCAACGCCugcCCugCGcuGCGGCAGCu -3'
miRNA:   3'- -UGUG---GUUGUGGu--GGugGU--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23512 0.72 0.712265
Target:  5'- cGCGCCGGC-CCGCCGagggccCCGACccccugGGCGGCu -3'
miRNA:   3'- -UGUGGUUGuGGUGGU------GGUUG------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 56380 0.72 0.716356
Target:  5'- aACACCAAC-CCgagguugaugACCugCAguccggcgugaacaaACAGCAGCg -3'
miRNA:   3'- -UGUGGUUGuGG----------UGGugGU---------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 26380 0.72 0.72247
Target:  5'- gGC-CCGcCGCCGCCGCCAuc-GCGGCc -3'
miRNA:   3'- -UGuGGUuGUGGUGGUGGUuguCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 86538 0.72 0.72247
Target:  5'- gACGCCGAUguACUuuuucuugGCgAUCAGCAGCAGCu -3'
miRNA:   3'- -UGUGGUUG--UGG--------UGgUGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 9661 0.72 0.72247
Target:  5'- cCGCCAggcACGCCugCGCCAACAGg--- -3'
miRNA:   3'- uGUGGU---UGUGGugGUGGUUGUCgucg -5'
5788 3' -53.3 NC_001806.1 + 69573 0.72 0.72247
Target:  5'- gGCGCCAGCGagcaCACgCACgGGCGGCucuGCg -3'
miRNA:   3'- -UGUGGUUGUg---GUG-GUGgUUGUCGu--CG- -5'
5788 3' -53.3 NC_001806.1 + 56991 0.72 0.72247
Target:  5'- aGCACCAGgAgCGCCGCaua-GGCGGCg -3'
miRNA:   3'- -UGUGGUUgUgGUGGUGguugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 68570 0.71 0.781629
Target:  5'- cCGCCGGC-CUGCgCACCG-CGGCGGCc -3'
miRNA:   3'- uGUGGUUGuGGUG-GUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 62823 0.71 0.781629
Target:  5'- gACGuCCGAgAUCugCGCCGagGCGGCGGUg -3'
miRNA:   3'- -UGU-GGUUgUGGugGUGGU--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 138361 0.71 0.781629
Target:  5'- aACGCCAGC-CgCAUCACCAACuacucGCAGa -3'
miRNA:   3'- -UGUGGUUGuG-GUGGUGGUUGu----CGUCg -5'
5788 3' -53.3 NC_001806.1 + 85857 0.71 0.781629
Target:  5'- cACGC--ACGCCGCCcCCAACAGguGg -3'
miRNA:   3'- -UGUGguUGUGGUGGuGGUUGUCguCg -5'
5788 3' -53.3 NC_001806.1 + 81429 0.71 0.781629
Target:  5'- cCGUCAGCGCCGCCGCCuGACcGCGGa -3'
miRNA:   3'- uGUGGUUGUGGUGGUGG-UUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 42775 0.71 0.781629
Target:  5'- uGCGCCAGgGCguCCugUAGC-GCGGCg -3'
miRNA:   3'- -UGUGGUUgUGguGGugGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 69431 0.71 0.772065
Target:  5'- cGCGCgGACGCCcaccgGCCACgGACucggcgaaguccAGCAGCu -3'
miRNA:   3'- -UGUGgUUGUGG-----UGGUGgUUG------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 79684 0.71 0.76237
Target:  5'- cGCGCCGACACCGCCG--GGCAcGCucccuGGCg -3'
miRNA:   3'- -UGUGGUUGUGGUGGUggUUGU-CG-----UCG- -5'
5788 3' -53.3 NC_001806.1 + 77790 0.71 0.76237
Target:  5'- uCAgCGACGCCcagGCCGCCAACuuuCAGCu -3'
miRNA:   3'- uGUgGUUGUGG---UGGUGGUUGuc-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 119189 0.71 0.781629
Target:  5'- gGCGCCGcCGCC-CCGCCGGCcgcgaaggaGGCuGCg -3'
miRNA:   3'- -UGUGGUuGUGGuGGUGGUUG---------UCGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.