miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 72588 0.71 0.781629
Target:  5'- cGC-CCAGuCGCCGCCACCGACccgGGCccgucGCg -3'
miRNA:   3'- -UGuGGUU-GUGGUGGUGGUUG---UCGu----CG- -5'
5788 3' -53.3 NC_001806.1 + 144158 0.71 0.781629
Target:  5'- cCGCCGGCcgGCUACCgagACCGaacACGGCGGCc -3'
miRNA:   3'- uGUGGUUG--UGGUGG---UGGU---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 119189 0.71 0.781629
Target:  5'- gGCGCCGcCGCC-CCGCCGGCcgcgaaggaGGCuGCg -3'
miRNA:   3'- -UGUGGUuGUGGuGGUGGUUG---------UCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 119798 0.71 0.76237
Target:  5'- uGguCCuGCGCCACCACUAcggaACcaAGCAGCg -3'
miRNA:   3'- -UguGGuUGUGGUGGUGGU----UG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 77790 0.71 0.76237
Target:  5'- uCAgCGACGCCcagGCCGCCAACuuuCAGCu -3'
miRNA:   3'- uGUgGUUGUGG---UGGUGGUUGuc-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 79684 0.71 0.76237
Target:  5'- cGCGCCGACACCGCCG--GGCAcGCucccuGGCg -3'
miRNA:   3'- -UGUGGUUGUGGUGGUggUUGU-CG-----UCG- -5'
5788 3' -53.3 NC_001806.1 + 69431 0.71 0.772065
Target:  5'- cGCGCgGACGCCcaccgGCCACgGACucggcgaaguccAGCAGCu -3'
miRNA:   3'- -UGUGgUUGUGG-----UGGUGgUUG------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 42775 0.71 0.781629
Target:  5'- uGCGCCAGgGCguCCugUAGC-GCGGCg -3'
miRNA:   3'- -UGUGGUUgUGguGGugGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 81429 0.71 0.781629
Target:  5'- cCGUCAGCGCCGCCGCCuGACcGCGGa -3'
miRNA:   3'- uGUGGUUGUGGUGGUGG-UUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 85857 0.71 0.781629
Target:  5'- cACGC--ACGCCGCCcCCAACAGguGg -3'
miRNA:   3'- -UGUGguUGUGGUGGuGGUUGUCguCg -5'
5788 3' -53.3 NC_001806.1 + 138361 0.71 0.781629
Target:  5'- aACGCCAGC-CgCAUCACCAACuacucGCAGa -3'
miRNA:   3'- -UGUGGUUGuG-GUGGUGGUUGu----CGUCg -5'
5788 3' -53.3 NC_001806.1 + 62823 0.71 0.781629
Target:  5'- gACGuCCGAgAUCugCGCCGagGCGGCGGUg -3'
miRNA:   3'- -UGU-GGUUgUGGugGUGGU--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 68570 0.71 0.781629
Target:  5'- cCGCCGGC-CUGCgCACCG-CGGCGGCc -3'
miRNA:   3'- uGUGGUUGuGGUG-GUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23307 0.7 0.818374
Target:  5'- gGC-CCGGCcCgGCCGCCcggaGGCGGCGGCc -3'
miRNA:   3'- -UGuGGUUGuGgUGGUGG----UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 50432 0.7 0.818374
Target:  5'- cGCACguGCACCACCccGCCuuuGCGGacguGGCg -3'
miRNA:   3'- -UGUGguUGUGGUGG--UGGu--UGUCg---UCG- -5'
5788 3' -53.3 NC_001806.1 + 112931 0.7 0.81303
Target:  5'- cCGCCAGCugUuuuuuugggggaaggACCGCCAGguGCuGCg -3'
miRNA:   3'- uGUGGUUGugG---------------UGGUGGUUguCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 100649 0.7 0.809433
Target:  5'- cCGCCGcCGCUcgGCCACCAGgcucCAGCGGUc -3'
miRNA:   3'- uGUGGUuGUGG--UGGUGGUU----GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 40342 0.7 0.809433
Target:  5'- uGCACgCGACuauCCGCC-CCAGCAGUuccgauGCg -3'
miRNA:   3'- -UGUG-GUUGu--GGUGGuGGUUGUCGu-----CG- -5'
5788 3' -53.3 NC_001806.1 + 119520 0.7 0.809433
Target:  5'- uACGCCAggGCGCCcugguucaccagGCCGUCAGCGGgGGCg -3'
miRNA:   3'- -UGUGGU--UGUGG------------UGGUGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 119932 0.7 0.826268
Target:  5'- uGCGCCGcagaacgcgucguGCGCCcCCACCAGCugucucccgcugGGCAGg -3'
miRNA:   3'- -UGUGGU-------------UGUGGuGGUGGUUG------------UCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.