Results 61 - 80 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 139836 | 0.73 | 0.649867 |
Target: 5'- aGCGCCAGgACCGCCuGCCGcGCGGaGGCg -3' miRNA: 3'- -UGUGGUUgUGGUGG-UGGU-UGUCgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 24162 | 0.73 | 0.649867 |
Target: 5'- uCGCCAGCGCCgGCgACCGGCGGCu-- -3' miRNA: 3'- uGUGGUUGUGG-UGgUGGUUGUCGucg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 1735 | 0.73 | 0.649867 |
Target: 5'- aGCGCCGGCAgCACgGCC--CGGCGGUa -3' miRNA: 3'- -UGUGGUUGUgGUGgUGGuuGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 22357 | 0.73 | 0.660358 |
Target: 5'- aACAgCAGCuccuUCAUCACCGGCAGCguGGCg -3' miRNA: 3'- -UGUgGUUGu---GGUGGUGGUUGUCG--UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 75930 | 0.73 | 0.660358 |
Target: 5'- -aACCAGCGCCACC-CCAugcuccccccGCucGCAGCc -3' miRNA: 3'- ugUGGUUGUGGUGGuGGU----------UGu-CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 22616 | 0.73 | 0.660358 |
Target: 5'- cCGCCGuCGCCGCCGCCGcACcgGGCgAGCg -3' miRNA: 3'- uGUGGUuGUGGUGGUGGU-UG--UCG-UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 97301 | 0.73 | 0.66978 |
Target: 5'- cACACCAGCuaCGCCGCCGACcgcuucaAGCAGg -3' miRNA: 3'- -UGUGGUUGugGUGGUGGUUG-------UCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 2315 | 0.73 | 0.66978 |
Target: 5'- -gGCCc-CGCCGCCGgccagguccucgcCCGGCAGCGGCg -3' miRNA: 3'- ugUGGuuGUGGUGGU-------------GGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 122874 | 0.73 | 0.670825 |
Target: 5'- cCGCC-GCGCCACgGCCGagaAgAGCGGCg -3' miRNA: 3'- uGUGGuUGUGGUGgUGGU---UgUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 51892 | 0.73 | 0.670825 |
Target: 5'- cGC-CCAGCACCGaCACCGcACuGCGGCu -3' miRNA: 3'- -UGuGGUUGUGGUgGUGGU-UGuCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 21490 | 0.73 | 0.670825 |
Target: 5'- -aGCCGACGCCGCCGgCGACcgGGCcccGGCc -3' miRNA: 3'- ugUGGUUGUGGUGGUgGUUG--UCG---UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 2081 | 0.73 | 0.670825 |
Target: 5'- cCGCCGGuCGCCGgCGCUGGCgAGCAGCc -3' miRNA: 3'- uGUGGUU-GUGGUgGUGGUUG-UCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 1817 | 0.73 | 0.670825 |
Target: 5'- aGCGCaCGuuGCCGCCGCggcacaggcgCAGCGGCGGCg -3' miRNA: 3'- -UGUG-GUugUGGUGGUG----------GUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 37231 | 0.73 | 0.670825 |
Target: 5'- cCGCCAGaCGCCGCCGCgAACA-CAGUu -3' miRNA: 3'- uGUGGUU-GUGGUGGUGgUUGUcGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 41431 | 0.73 | 0.681259 |
Target: 5'- cGCGCCGuggucgggguGCGCCGCCGCUu-CGGCGGa -3' miRNA: 3'- -UGUGGU----------UGUGGUGGUGGuuGUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 33334 | 0.73 | 0.681259 |
Target: 5'- uCGCCGACGCCccuugGCCGCCc-CGGCuGCa -3' miRNA: 3'- uGUGGUUGUGG-----UGGUGGuuGUCGuCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 20020 | 0.73 | 0.681259 |
Target: 5'- gAUGCCGACGCCGuCCGcuCCGACGGCccucuGCg -3' miRNA: 3'- -UGUGGUUGUGGU-GGU--GGUUGUCGu----CG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 103789 | 0.73 | 0.681259 |
Target: 5'- uGCugCAgacccccggGCGgCGCCGCCG-CGGCGGCg -3' miRNA: 3'- -UGugGU---------UGUgGUGGUGGUuGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 50663 | 0.73 | 0.681259 |
Target: 5'- cGCACCGGCGCCGggACgAcGCGGCGGCc -3' miRNA: 3'- -UGUGGUUGUGGUggUGgU-UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 119111 | 0.73 | 0.69165 |
Target: 5'- --cCCAACACgCGCUacgcgGCCGACAGCAcGCg -3' miRNA: 3'- uguGGUUGUG-GUGG-----UGGUUGUCGU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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