miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 119111 0.73 0.69165
Target:  5'- --cCCAACACgCGCUacgcgGCCGACAGCAcGCg -3'
miRNA:   3'- uguGGUUGUG-GUGG-----UGGUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 133614 0.72 0.701988
Target:  5'- -gGCCAGCGaccccuugccccCCACUGCCuuccGCGGCGGCg -3'
miRNA:   3'- ugUGGUUGU------------GGUGGUGGu---UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 100483 0.72 0.701988
Target:  5'- gGCACCGGuCACC-CUGCgGcGCGGCAGCg -3'
miRNA:   3'- -UGUGGUU-GUGGuGGUGgU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 91691 0.72 0.701988
Target:  5'- uCGCCAGCGCCGCCcgcggaGCCAuCGGCGu- -3'
miRNA:   3'- uGUGGUUGUGGUGG------UGGUuGUCGUcg -5'
5788 3' -53.3 NC_001806.1 + 47672 0.72 0.701988
Target:  5'- gUACCggUACCugCgcGCCAGCguccGGCAGCu -3'
miRNA:   3'- uGUGGuuGUGGugG--UGGUUG----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3696 0.72 0.712265
Target:  5'- cCGUCAGCGCCGCguucucgcgCGCCAACAGgGGCg -3'
miRNA:   3'- uGUGGUUGUGGUG---------GUGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 133042 0.72 0.712265
Target:  5'- gACACgugCAACGCCugcCCugCGcuGCGGCAGCu -3'
miRNA:   3'- -UGUG---GUUGUGGu--GGugGU--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23512 0.72 0.712265
Target:  5'- cGCGCCGGC-CCGCCGagggccCCGACccccugGGCGGCu -3'
miRNA:   3'- -UGUGGUUGuGGUGGU------GGUUG------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 56380 0.72 0.716356
Target:  5'- aACACCAAC-CCgagguugaugACCugCAguccggcgugaacaaACAGCAGCg -3'
miRNA:   3'- -UGUGGUUGuGG----------UGGugGU---------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 26380 0.72 0.72247
Target:  5'- gGC-CCGcCGCCGCCGCCAuc-GCGGCc -3'
miRNA:   3'- -UGuGGUuGUGGUGGUGGUuguCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 86538 0.72 0.72247
Target:  5'- gACGCCGAUguACUuuuucuugGCgAUCAGCAGCAGCu -3'
miRNA:   3'- -UGUGGUUG--UGG--------UGgUGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 9661 0.72 0.72247
Target:  5'- cCGCCAggcACGCCugCGCCAACAGg--- -3'
miRNA:   3'- uGUGGU---UGUGGugGUGGUUGUCgucg -5'
5788 3' -53.3 NC_001806.1 + 69573 0.72 0.72247
Target:  5'- gGCGCCAGCGagcaCACgCACgGGCGGCucuGCg -3'
miRNA:   3'- -UGUGGUUGUg---GUG-GUGgUUGUCGu--CG- -5'
5788 3' -53.3 NC_001806.1 + 56991 0.72 0.72247
Target:  5'- aGCACCAGgAgCGCCGCaua-GGCGGCg -3'
miRNA:   3'- -UGUGGUUgUgGUGGUGguugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 147435 0.72 0.730575
Target:  5'- cGCGCCucuuccucggacGCACCGCCGCCuccuGCucgacagaGGCGGCg -3'
miRNA:   3'- -UGUGGu-----------UGUGGUGGUGGu---UG--------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 5142 0.72 0.732592
Target:  5'- --uCCGACGCCAUCGCCGAUGcGgGGCg -3'
miRNA:   3'- uguGGUUGUGGUGGUGGUUGU-CgUCG- -5'
5788 3' -53.3 NC_001806.1 + 50695 0.72 0.741625
Target:  5'- cGCGCCAuucugGCCGCCGggcucguCCuGCAGCGGCu -3'
miRNA:   3'- -UGUGGUug---UGGUGGU-------GGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 84805 0.72 0.742624
Target:  5'- gACACCGACccCCAUCGCC-GCGGCuccGGCc -3'
miRNA:   3'- -UGUGGUUGu-GGUGGUGGuUGUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 145754 0.72 0.742624
Target:  5'- cACACCAACcCCACguCCccCGGCGGUc -3'
miRNA:   3'- -UGUGGUUGuGGUGguGGuuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 24522 0.72 0.742624
Target:  5'- -uGCCGGCGCUggACgGCCGgGCGGCGGCc -3'
miRNA:   3'- ugUGGUUGUGG--UGgUGGU-UGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.