miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 24522 0.72 0.742624
Target:  5'- -uGCCGGCGCUggACgGCCGgGCGGCGGCc -3'
miRNA:   3'- ugUGGUUGUGG--UGgUGGU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 145754 0.72 0.742624
Target:  5'- cACACCAACcCCACguCCccCGGCGGUc -3'
miRNA:   3'- -UGUGGUUGuGGUGguGGuuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 84805 0.72 0.742624
Target:  5'- gACACCGACccCCAUCGCC-GCGGCuccGGCc -3'
miRNA:   3'- -UGUGGUUGu-GGUGGUGGuUGUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 78614 0.72 0.742624
Target:  5'- -uGCCGGcCGCCGCCACCcaccGCAcccccGCGGCg -3'
miRNA:   3'- ugUGGUU-GUGGUGGUGGu---UGU-----CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 144933 0.72 0.752553
Target:  5'- aACACuCGGgGuuACCGCCAACGGcCGGCc -3'
miRNA:   3'- -UGUG-GUUgUggUGGUGGUUGUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 133272 0.72 0.752553
Target:  5'- -gGCCAACGCCGu--CCGGCuGCGGCa -3'
miRNA:   3'- ugUGGUUGUGGUgguGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 106775 0.72 0.752553
Target:  5'- cGCGCUgGACGCCuCCGCCgcGugGGCGGCu -3'
miRNA:   3'- -UGUGG-UUGUGGuGGUGG--UugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 54783 0.72 0.752553
Target:  5'- cGCGgCAGCACCAggGCCAGCccGGUGGCa -3'
miRNA:   3'- -UGUgGUUGUGGUggUGGUUG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 145715 0.72 0.752553
Target:  5'- gUACCGGC-CCACCugGCCGcGCGGguGCg -3'
miRNA:   3'- uGUGGUUGuGGUGG--UGGU-UGUCguCG- -5'
5788 3' -53.3 NC_001806.1 + 60450 0.72 0.756494
Target:  5'- cACACCAGCucgcgcuccacggaaACCaggcccccucuGCCGCCGGCcgccGGCGGCa -3'
miRNA:   3'- -UGUGGUUG---------------UGG-----------UGGUGGUUG----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 79684 0.71 0.76237
Target:  5'- cGCGCCGACACCGCCG--GGCAcGCucccuGGCg -3'
miRNA:   3'- -UGUGGUUGUGGUGGUggUUGU-CG-----UCG- -5'
5788 3' -53.3 NC_001806.1 + 77790 0.71 0.76237
Target:  5'- uCAgCGACGCCcagGCCGCCAACuuuCAGCu -3'
miRNA:   3'- uGUgGUUGUGG---UGGUGGUUGuc-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 119798 0.71 0.76237
Target:  5'- uGguCCuGCGCCACCACUAcggaACcaAGCAGCg -3'
miRNA:   3'- -UguGGuUGUGGUGGUGGU----UG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 69431 0.71 0.772065
Target:  5'- cGCGCgGACGCCcaccgGCCACgGACucggcgaaguccAGCAGCu -3'
miRNA:   3'- -UGUGgUUGUGG-----UGGUGgUUG------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 68570 0.71 0.781629
Target:  5'- cCGCCGGC-CUGCgCACCG-CGGCGGCc -3'
miRNA:   3'- uGUGGUUGuGGUG-GUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 62823 0.71 0.781629
Target:  5'- gACGuCCGAgAUCugCGCCGagGCGGCGGUg -3'
miRNA:   3'- -UGU-GGUUgUGGugGUGGU--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 138361 0.71 0.781629
Target:  5'- aACGCCAGC-CgCAUCACCAACuacucGCAGa -3'
miRNA:   3'- -UGUGGUUGuG-GUGGUGGUUGu----CGUCg -5'
5788 3' -53.3 NC_001806.1 + 85857 0.71 0.781629
Target:  5'- cACGC--ACGCCGCCcCCAACAGguGg -3'
miRNA:   3'- -UGUGguUGUGGUGGuGGUUGUCguCg -5'
5788 3' -53.3 NC_001806.1 + 81429 0.71 0.781629
Target:  5'- cCGUCAGCGCCGCCGCCuGACcGCGGa -3'
miRNA:   3'- uGUGGUUGUGGUGGUGG-UUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 119189 0.71 0.781629
Target:  5'- gGCGCCGcCGCC-CCGCCGGCcgcgaaggaGGCuGCg -3'
miRNA:   3'- -UGUGGUuGUGGuGGUGGUUG---------UCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.