miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 85857 0.71 0.781629
Target:  5'- cACGC--ACGCCGCCcCCAACAGguGg -3'
miRNA:   3'- -UGUGguUGUGGUGGuGGUUGUCguCg -5'
5788 3' -53.3 NC_001806.1 + 81429 0.71 0.781629
Target:  5'- cCGUCAGCGCCGCCGCCuGACcGCGGa -3'
miRNA:   3'- uGUGGUUGUGGUGGUGG-UUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 42775 0.71 0.781629
Target:  5'- uGCGCCAGgGCguCCugUAGC-GCGGCg -3'
miRNA:   3'- -UGUGGUUgUGguGGugGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 10971 0.71 0.785415
Target:  5'- aACACCGAaagaaacccCACCACCGCCccgcGAUccaugucccggggauAGCAGCc -3'
miRNA:   3'- -UGUGGUU---------GUGGUGGUGG----UUG---------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 151378 0.71 0.790115
Target:  5'- gACGCgGACucgggaacguggaGCCACUgGCgCAGCAGCAGCg -3'
miRNA:   3'- -UGUGgUUG-------------UGGUGG-UG-GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3415 0.71 0.791051
Target:  5'- -gGCCAGCGCCuCCAggauCCcGCGGCAGg -3'
miRNA:   3'- ugUGGUUGUGGuGGU----GGuUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 130652 0.71 0.791051
Target:  5'- cGCGuucCCAugGCCACC-C--GCAGCAGCg -3'
miRNA:   3'- -UGU---GGUugUGGUGGuGguUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 94965 0.71 0.791051
Target:  5'- cGCGCCGGCcagACCACCAUgGACGcguuuGcCAGCa -3'
miRNA:   3'- -UGUGGUUG---UGGUGGUGgUUGU-----C-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 2998 0.71 0.791051
Target:  5'- gGCGgCGGCgGCCGCCAgCGcguCGGCGGCg -3'
miRNA:   3'- -UGUgGUUG-UGGUGGUgGUu--GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 572 0.71 0.791051
Target:  5'- cACACCGcuccugcuacACACCACCGCCcccucccCAGCcccAGCc -3'
miRNA:   3'- -UGUGGU----------UGUGGUGGUGGuu-----GUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 138137 0.71 0.791051
Target:  5'- uCACCAACcCCGCCAaccuccCCGGCuggacGCGGCu -3'
miRNA:   3'- uGUGGUUGuGGUGGU------GGUUGu----CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 123097 0.71 0.797557
Target:  5'- gACGCCAGCugCugaccaaacaucgcGCaCACCGgguggcgggucGCGGCGGCg -3'
miRNA:   3'- -UGUGGUUGugG--------------UG-GUGGU-----------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 55199 0.71 0.800322
Target:  5'- uCGCCGAUaaucaGCCGCUGggUCGGCAGCGGCc -3'
miRNA:   3'- uGUGGUUG-----UGGUGGU--GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 100649 0.7 0.809433
Target:  5'- cCGCCGcCGCUcgGCCACCAGgcucCAGCGGUc -3'
miRNA:   3'- uGUGGUuGUGG--UGGUGGUU----GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 40342 0.7 0.809433
Target:  5'- uGCACgCGACuauCCGCC-CCAGCAGUuccgauGCg -3'
miRNA:   3'- -UGUG-GUUGu--GGUGGuGGUUGUCGu-----CG- -5'
5788 3' -53.3 NC_001806.1 + 119520 0.7 0.809433
Target:  5'- uACGCCAggGCGCCcugguucaccagGCCGUCAGCGGgGGCg -3'
miRNA:   3'- -UGUGGU--UGUGG------------UGGUGGUUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 113430 0.7 0.809433
Target:  5'- cACGCCAugGCCcccGCCACCAucgccgccguucGCGG-GGCg -3'
miRNA:   3'- -UGUGGUugUGG---UGGUGGU------------UGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 112931 0.7 0.81303
Target:  5'- cCGCCAGCugUuuuuuugggggaaggACCGCCAGguGCuGCg -3'
miRNA:   3'- uGUGGUUGugG---------------UGGUGGUUguCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 50432 0.7 0.818374
Target:  5'- cGCACguGCACCACCccGCCuuuGCGGacguGGCg -3'
miRNA:   3'- -UGUGguUGUGGUGG--UGGu--UGUCg---UCG- -5'
5788 3' -53.3 NC_001806.1 + 23307 0.7 0.818374
Target:  5'- gGC-CCGGCcCgGCCGCCcggaGGCGGCGGCc -3'
miRNA:   3'- -UGuGGUUGuGgUGGUGG----UUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.