miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 77270 0.66 0.955328
Target:  5'- gACGCgGugGCCggggaccugGCC-CCAugGGCGGUg -3'
miRNA:   3'- -UGUGgUugUGG---------UGGuGGUugUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 23905 0.66 0.95493
Target:  5'- uGCugUAcuCGCCGCUGCCGGgcgaggaccuggcCGGCGGCg -3'
miRNA:   3'- -UGugGUu-GUGGUGGUGGUU-------------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 1419 0.66 0.952904
Target:  5'- -gGCCGAgGCCcagcgaaucccgggcGgCGCCGGCGGCAGg -3'
miRNA:   3'- ugUGGUUgUGG---------------UgGUGGUUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 100894 0.66 0.95124
Target:  5'- cGCGCaCAGCGCgACgugCGCgAACAGCGuGCg -3'
miRNA:   3'- -UGUG-GUUGUGgUG---GUGgUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 64901 0.66 0.95124
Target:  5'- -gACCAGCGCCgGCCuCUGGCGuCGGCg -3'
miRNA:   3'- ugUGGUUGUGG-UGGuGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 97348 0.66 0.95124
Target:  5'- cGCGCgCGACcUCACCACCAaggcccgggccACGGC-GCc -3'
miRNA:   3'- -UGUG-GUUGuGGUGGUGGU-----------UGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 82584 0.66 0.95124
Target:  5'- cCACCAAaggguucgcgaACCGucCCGcCCAACAGCAcGCg -3'
miRNA:   3'- uGUGGUUg----------UGGU--GGU-GGUUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 35852 0.66 0.95124
Target:  5'- cGCGCgAGCugUACagggcCCAACGcGCGGCg -3'
miRNA:   3'- -UGUGgUUGugGUGgu---GGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 32982 0.66 0.95124
Target:  5'- cCGCCGGgGCCccgggccggGCCGCC-ACGGgGGCc -3'
miRNA:   3'- uGUGGUUgUGG---------UGGUGGuUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 146216 0.66 0.95124
Target:  5'- aACACCAGaGCCugC-CCAACA-UGGCa -3'
miRNA:   3'- -UGUGGUUgUGGugGuGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 148131 0.66 0.949537
Target:  5'- gGCugCGugagACGCC-CCGCCcgucacggggggcGCGGCGGCg -3'
miRNA:   3'- -UGugGU----UGUGGuGGUGGu------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 20585 0.67 0.946909
Target:  5'- cCGCCcucGCGCC-CCGCCcAUGGCAGa -3'
miRNA:   3'- uGUGGu--UGUGGuGGUGGuUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 127500 0.67 0.946909
Target:  5'- -aACCAAaca-GCUACCAACGGCGGa -3'
miRNA:   3'- ugUGGUUguggUGGUGGUUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 131194 0.67 0.946909
Target:  5'- -gACCAcaGCGCCugCcggACCcACAgGCAGCu -3'
miRNA:   3'- ugUGGU--UGUGGugG---UGGuUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 42615 0.67 0.946909
Target:  5'- cGCGCCcugauCAUaCugCGCCG-CGGCGGCg -3'
miRNA:   3'- -UGUGGuu---GUG-GugGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 75431 0.67 0.946909
Target:  5'- uGCGCCGG-GCCGCCaACCAACcggagggagAGCAuGCc -3'
miRNA:   3'- -UGUGGUUgUGGUGG-UGGUUG---------UCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 38058 0.67 0.946909
Target:  5'- gACGCCcacGGCGuCCGCCGCgGGCAGgCugGGCu -3'
miRNA:   3'- -UGUGG---UUGU-GGUGGUGgUUGUC-G--UCG- -5'
5788 3' -53.3 NC_001806.1 + 122989 0.67 0.946909
Target:  5'- gGCACUcguagGGCAUCGCCGCCcAUGGUgaGGCc -3'
miRNA:   3'- -UGUGG-----UUGUGGUGGUGGuUGUCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 21153 0.67 0.946463
Target:  5'- cCACCGACggGCCGCCGCCcACcccgAGCccagaccgcgacgAGCg -3'
miRNA:   3'- uGUGGUUG--UGGUGGUGGuUG----UCG-------------UCG- -5'
5788 3' -53.3 NC_001806.1 + 22753 0.67 0.944192
Target:  5'- cACGCCGACGCCGacgacgaCGCCGGgcgccgcgcccaggcCGGCcGCg -3'
miRNA:   3'- -UGUGGUUGUGGUg------GUGGUU---------------GUCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.