Results 81 - 100 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5788 | 3' | -53.3 | NC_001806.1 | + | 52092 | 0.67 | 0.937505 |
Target: 5'- --cCCAGCGgCACgACCGGCuccauGCAGUg -3' miRNA: 3'- uguGGUUGUgGUGgUGGUUGu----CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 147670 | 0.67 | 0.937505 |
Target: 5'- -gGCCGGCuCCGCC-CCGGgGGCcggGGCg -3' miRNA: 3'- ugUGGUUGuGGUGGuGGUUgUCG---UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 10529 | 0.67 | 0.937505 |
Target: 5'- cCACCAGgACCACCgagGCCAcuuGGCgAGCc -3' miRNA: 3'- uGUGGUUgUGGUGG---UGGUug-UCG-UCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 85941 | 0.67 | 0.937505 |
Target: 5'- -gGCCAGC-UCGgaCACCAGCAGCuuGCg -3' miRNA: 3'- ugUGGUUGuGGUg-GUGGUUGUCGu-CG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 116137 | 0.67 | 0.937505 |
Target: 5'- gGCAUCucGCGCC-CCGau-GCGGCGGCg -3' miRNA: 3'- -UGUGGu-UGUGGuGGUgguUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 73250 | 0.67 | 0.937505 |
Target: 5'- cCACCcaAACGugGCCGCC-ACGGCGGUu -3' miRNA: 3'- uGUGG--UUGUggUGGUGGuUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 47414 | 0.67 | 0.937505 |
Target: 5'- -gACCAACGCCgACCugUAcCGGgAGUg -3' miRNA: 3'- ugUGGUUGUGG-UGGugGUuGUCgUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 57181 | 0.67 | 0.932429 |
Target: 5'- aGC-CCAGCACgGCgCACCcGACGGCGaacGCc -3' miRNA: 3'- -UGuGGUUGUGgUG-GUGG-UUGUCGU---CG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 76527 | 0.67 | 0.932429 |
Target: 5'- cGCGCCGAaGCCACCGagCGggucACGGCGGg -3' miRNA: 3'- -UGUGGUUgUGGUGGUg-GU----UGUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 125006 | 0.67 | 0.932429 |
Target: 5'- gGCAuCCGGCGCCACCuccgcaaucCCAAgauuCGGCGcGCg -3' miRNA: 3'- -UGU-GGUUGUGGUGGu--------GGUU----GUCGU-CG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 132737 | 0.67 | 0.932429 |
Target: 5'- gGC-CCGGCGugGCC-UCGGCGGCAGCc -3' miRNA: 3'- -UGuGGUUGUggUGGuGGUUGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 97446 | 0.67 | 0.932429 |
Target: 5'- aGCGCCcgucggucuGCACCAUgACCAAgUGGCAGg -3' miRNA: 3'- -UGUGGu--------UGUGGUGgUGGUU-GUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 125841 | 0.67 | 0.932429 |
Target: 5'- cGCGCCGcggGCccccgGCCGCCGCgGACGccGUGGCg -3' miRNA: 3'- -UGUGGU---UG-----UGGUGGUGgUUGU--CGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 129664 | 0.67 | 0.932429 |
Target: 5'- uGCGCCcGC-CCggGCCGCCG--AGCGGCc -3' miRNA: 3'- -UGUGGuUGuGG--UGGUGGUugUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 46223 | 0.67 | 0.932429 |
Target: 5'- gGCcCCGGCGgCggagACCACCcGCGGCAGg -3' miRNA: 3'- -UGuGGUUGUgG----UGGUGGuUGUCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 21590 | 0.67 | 0.930856 |
Target: 5'- cCGCCGGCccaGCCGCCGCgGAgacgucgucacggcCGGUGGCg -3' miRNA: 3'- uGUGGUUG---UGGUGGUGgUU--------------GUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 86368 | 0.67 | 0.930856 |
Target: 5'- cGCGCCAGCcacuCCuCCGCgGggcgcucggcuaacGCGGCGGCc -3' miRNA: 3'- -UGUGGUUGu---GGuGGUGgU--------------UGUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 114327 | 0.67 | 0.9271 |
Target: 5'- aACGCaCAACGgCGCUGCUcugcuCGGCGGCg -3' miRNA: 3'- -UGUG-GUUGUgGUGGUGGuu---GUCGUCG- -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 53771 | 0.67 | 0.9271 |
Target: 5'- cCGCCGACGCCGuCgACgAGCcGCAGg -3' miRNA: 3'- uGUGGUUGUGGU-GgUGgUUGuCGUCg -5' |
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5788 | 3' | -53.3 | NC_001806.1 | + | 70132 | 0.67 | 0.9271 |
Target: 5'- cGCGCUGAuCACCcuccucgaaccgGCCGCCcGgGGCGGCc -3' miRNA: 3'- -UGUGGUU-GUGG------------UGGUGGuUgUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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