miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 35563 0.67 0.9271
Target:  5'- cGCGcCCGGCGCCG-CGCCGAacgacgugcGCAGCg -3'
miRNA:   3'- -UGU-GGUUGUGGUgGUGGUUgu-------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 2123 0.67 0.9271
Target:  5'- gGCcCCGGCgaagGCCAggucCCGCguggaCAGCAGCAGCa -3'
miRNA:   3'- -UGuGGUUG----UGGU----GGUG-----GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 3172 0.67 0.9271
Target:  5'- gGCGC--GCACgGCgGCC-ACGGCGGCc -3'
miRNA:   3'- -UGUGguUGUGgUGgUGGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 15552 0.67 0.9271
Target:  5'- cGCAaaCAGCACCGCCcCCAgGgGGCGGUc -3'
miRNA:   3'- -UGUg-GUUGUGGUGGuGGU-UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 68224 0.67 0.9271
Target:  5'- cCGCCAACccCCACgGCCGagACGGCAa- -3'
miRNA:   3'- uGUGGUUGu-GGUGgUGGU--UGUCGUcg -5'
5788 3' -53.3 NC_001806.1 + 53771 0.67 0.9271
Target:  5'- cCGCCGACGCCGuCgACgAGCcGCAGg -3'
miRNA:   3'- uGUGGUUGUGGU-GgUGgUUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 86916 0.67 0.9271
Target:  5'- uACACCGAguUACaCACgACCuuGAUGGCGGCc -3'
miRNA:   3'- -UGUGGUU--GUG-GUGgUGG--UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 102410 0.67 0.925452
Target:  5'- gACGCCAGCGCUccguguucguagcgGCCcCCGcCGGCcGCg -3'
miRNA:   3'- -UGUGGUUGUGG--------------UGGuGGUuGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 2178 0.68 0.921518
Target:  5'- aGCGCCGACACgucgggggCGCCGguCCAAUugcccgcccaGGCGGCc -3'
miRNA:   3'- -UGUGGUUGUG--------GUGGU--GGUUG----------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 114204 0.68 0.921518
Target:  5'- cGCACCcccuGCACC-CgGCCAAUcuGGUGGCc -3'
miRNA:   3'- -UGUGGu---UGUGGuGgUGGUUG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 37600 0.68 0.921518
Target:  5'- cCGCCAGCACCgggGCCcagggGCUAuucGCGGCGGg -3'
miRNA:   3'- uGUGGUUGUGG---UGG-----UGGU---UGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 112089 0.68 0.921518
Target:  5'- uCGCCAguuGCG-CGCCAuCCAACAGCucGCu -3'
miRNA:   3'- uGUGGU---UGUgGUGGU-GGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 143872 0.68 0.921518
Target:  5'- cCACCGACACCcCCACCc-CAGUc-- -3'
miRNA:   3'- uGUGGUUGUGGuGGUGGuuGUCGucg -5'
5788 3' -53.3 NC_001806.1 + 4284 0.68 0.915685
Target:  5'- cCGCCGGgGCUGCCcgGCCGugAaGCGGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG--UGGUugU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 75306 0.68 0.915685
Target:  5'- --cCUAGCgGCCAUgGCCGACAGCGccGCg -3'
miRNA:   3'- uguGGUUG-UGGUGgUGGUUGUCGU--CG- -5'
5788 3' -53.3 NC_001806.1 + 85173 0.68 0.915685
Target:  5'- aACGCgGGagacgggcgguuCGCCGCCACCAGCcGCgaGGCc -3'
miRNA:   3'- -UGUGgUU------------GUGGUGGUGGUUGuCG--UCG- -5'
5788 3' -53.3 NC_001806.1 + 4063 0.68 0.915685
Target:  5'- gGCGCCcACACgGCCGCCGG-GGC-GCc -3'
miRNA:   3'- -UGUGGuUGUGgUGGUGGUUgUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 95196 0.68 0.915685
Target:  5'- cGCGCguGCuacgACCACCACCuGACGacgccgcucuuGCGGCg -3'
miRNA:   3'- -UGUGguUG----UGGUGGUGG-UUGU-----------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 103107 0.68 0.915685
Target:  5'- gAUAUCGACggggagcucgGCCGCCugC-AUGGCGGCg -3'
miRNA:   3'- -UGUGGUUG----------UGGUGGugGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 46304 0.68 0.915685
Target:  5'- gGCGCCAACccgauCCAagaCACCcgcGCAGgGGCu -3'
miRNA:   3'- -UGUGGUUGu----GGUg--GUGGu--UGUCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.