miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 9698 0.77 0.456526
Target:  5'- cACACCGACaACC-CCAgUgcaGACAGCAGCa -3'
miRNA:   3'- -UGUGGUUG-UGGuGGUgG---UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 10529 0.67 0.937505
Target:  5'- cCACCAGgACCACCgagGCCAcuuGGCgAGCc -3'
miRNA:   3'- uGUGGUUgUGGUGG---UGGUug-UCG-UCG- -5'
5788 3' -53.3 NC_001806.1 + 10710 0.69 0.852268
Target:  5'- -gGCguACGCCAUCGCCAGCGGgaccggAGCg -3'
miRNA:   3'- ugUGguUGUGGUGGUGGUUGUCg-----UCG- -5'
5788 3' -53.3 NC_001806.1 + 10971 0.71 0.785415
Target:  5'- aACACCGAaagaaacccCACCACCGCCccgcGAUccaugucccggggauAGCAGCc -3'
miRNA:   3'- -UGUGGUU---------GUGGUGGUGG----UUG---------------UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 11058 0.69 0.860235
Target:  5'- aGCACC-GCACCAacCCGCCAGaagaGGCAa- -3'
miRNA:   3'- -UGUGGuUGUGGU--GGUGGUUg---UCGUcg -5'
5788 3' -53.3 NC_001806.1 + 12429 0.75 0.566119
Target:  5'- cCACgAGCACCAggcCCugCAACGgGCGGCa -3'
miRNA:   3'- uGUGgUUGUGGU---GGugGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 14265 0.66 0.955328
Target:  5'- gAUGgUAACGCCcCCACCcGCGGCAcGUa -3'
miRNA:   3'- -UGUgGUUGUGGuGGUGGuUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 15552 0.67 0.9271
Target:  5'- cGCAaaCAGCACCGCCcCCAgGgGGCGGUc -3'
miRNA:   3'- -UGUg-GUUGUGGUGGuGGU-UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 17028 0.66 0.966178
Target:  5'- cGCACCGugAgUGCCaACCAACgAGCAc- -3'
miRNA:   3'- -UGUGGUugUgGUGG-UGGUUG-UCGUcg -5'
5788 3' -53.3 NC_001806.1 + 18855 0.66 0.969341
Target:  5'- cCGCCgGACACCugCAgCAaACGGCAccacguGCg -3'
miRNA:   3'- uGUGG-UUGUGGugGUgGU-UGUCGU------CG- -5'
5788 3' -53.3 NC_001806.1 + 20020 0.73 0.681259
Target:  5'- gAUGCCGACGCCGuCCGcuCCGACGGCccucuGCg -3'
miRNA:   3'- -UGUGGUUGUGGU-GGU--GGUUGUCGu----CG- -5'
5788 3' -53.3 NC_001806.1 + 20585 0.67 0.946909
Target:  5'- cCGCCcucGCGCC-CCGCCcAUGGCAGa -3'
miRNA:   3'- uGUGGu--UGUGGuGGUGGuUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 21153 0.67 0.946463
Target:  5'- cCACCGACggGCCGCCGCCcACcccgAGCccagaccgcgacgAGCg -3'
miRNA:   3'- uGUGGUUG--UGGUGGUGGuUG----UCG-------------UCG- -5'
5788 3' -53.3 NC_001806.1 + 21332 0.7 0.844091
Target:  5'- gACGCCGgggACGCCGucUCGCCGcgACAGCuGGCu -3'
miRNA:   3'- -UGUGGU---UGUGGU--GGUGGU--UGUCG-UCG- -5'
5788 3' -53.3 NC_001806.1 + 21490 0.73 0.670825
Target:  5'- -aGCCGACGCCGCCGgCGACcgGGCcccGGCc -3'
miRNA:   3'- ugUGGUUGUGGUGGUgGUUG--UCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 21590 0.67 0.930856
Target:  5'- cCGCCGGCccaGCCGCCGCgGAgacgucgucacggcCGGUGGCg -3'
miRNA:   3'- uGUGGUUG---UGGUGGUGgUU--------------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 21850 0.67 0.942332
Target:  5'- -gGCC-GCGCCcaaGCCcCgGGCGGCGGCg -3'
miRNA:   3'- ugUGGuUGUGG---UGGuGgUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 21902 0.74 0.618341
Target:  5'- cGCAUCgAGCGCCGCCggGCCcgcGCGGCGGUg -3'
miRNA:   3'- -UGUGG-UUGUGGUGG--UGGu--UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 21991 0.69 0.889867
Target:  5'- gACGCCGACGCgACCuCCGGCGccuucuacGCGcGCu -3'
miRNA:   3'- -UGUGGUUGUGgUGGuGGUUGU--------CGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 22058 0.68 0.915685
Target:  5'- gGC-CCGGCGCCGggcccCCGCCcccggGGCGGguGCu -3'
miRNA:   3'- -UGuGGUUGUGGU-----GGUGG-----UUGUCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.