miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 24558 0.68 0.909602
Target:  5'- cCACCGACGCCAUggCGCC--CGGCGcGCc -3'
miRNA:   3'- uGUGGUUGUGGUG--GUGGuuGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 24812 0.75 0.550649
Target:  5'- cCGCCGGCGCCGCCcgggauucgcuggGCCucggccacgggccGCAGCGGCa -3'
miRNA:   3'- uGUGGUUGUGGUGG-------------UGGu------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 26380 0.72 0.72247
Target:  5'- gGC-CCGcCGCCGCCGCCAuc-GCGGCc -3'
miRNA:   3'- -UGuGGUuGUGGUGGUGGUuguCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 26647 0.7 0.844091
Target:  5'- gGCGCCAGaggcccggccCACCGCCGCCGcccccCGGCcccGGCc -3'
miRNA:   3'- -UGUGGUU----------GUGGUGGUGGUu----GUCG---UCG- -5'
5788 3' -53.3 NC_001806.1 + 26799 0.69 0.860235
Target:  5'- aGCACCuggcGCGCCugCGCCugcGACGcGCGGg -3'
miRNA:   3'- -UGUGGu---UGUGGugGUGG---UUGU-CGUCg -5'
5788 3' -53.3 NC_001806.1 + 27273 0.76 0.505113
Target:  5'- -gGCCAAUcgGCgGCCGCCAGC-GCGGCg -3'
miRNA:   3'- ugUGGUUG--UGgUGGUGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 28975 0.75 0.555792
Target:  5'- -gACCGAgACCugC-CgGACAGCAGCg -3'
miRNA:   3'- ugUGGUUgUGGugGuGgUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 29035 0.7 0.835711
Target:  5'- gACGCCGAcCACCAugacgacgacuCCGCCuccgaGGCGGaCAGCa -3'
miRNA:   3'- -UGUGGUU-GUGGU-----------GGUGG-----UUGUC-GUCG- -5'
5788 3' -53.3 NC_001806.1 + 29869 0.74 0.618341
Target:  5'- aGCGCCccccucGGCGCCcaucggGCCACaCGGCAGCAGUn -3'
miRNA:   3'- -UGUGG------UUGUGG------UGGUG-GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 29909 1.12 0.002748
Target:  5'- aACACCAACACCACCACCAACAGCAGCg -3'
miRNA:   3'- -UGUGGUUGUGGUGGUGGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 30472 0.69 0.865683
Target:  5'- gGCGCCGccccGCuccccuCCGCCGCCucugucgagcaggaGGCGGCGGUg -3'
miRNA:   3'- -UGUGGU----UGu-----GGUGGUGG--------------UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 31454 0.75 0.576495
Target:  5'- gACACgGGCACCACaCACCAGCGGg--- -3'
miRNA:   3'- -UGUGgUUGUGGUG-GUGGUUGUCgucg -5'
5788 3' -53.3 NC_001806.1 + 32982 0.66 0.95124
Target:  5'- cCGCCGGgGCCccgggccggGCCGCC-ACGGgGGCc -3'
miRNA:   3'- uGUGGUUgUGG---------UGGUGGuUGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 33334 0.73 0.681259
Target:  5'- uCGCCGACGCCccuugGCCGCCc-CGGCuGCa -3'
miRNA:   3'- uGUGGUUGUGG-----UGGUGGuuGUCGuCG- -5'
5788 3' -53.3 NC_001806.1 + 33740 0.7 0.835711
Target:  5'- cGCGCCGGC-UCugCGgugUCGGCGGCGGCu -3'
miRNA:   3'- -UGUGGUUGuGGugGU---GGUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 34665 0.78 0.393001
Target:  5'- cCACCAcCACCACCACCGACAccucccGC-GCa -3'
miRNA:   3'- uGUGGUuGUGGUGGUGGUUGU------CGuCG- -5'
5788 3' -53.3 NC_001806.1 + 34718 0.69 0.882087
Target:  5'- -aACCcGCACCACCAgCAcggguugGgGGUAGCa -3'
miRNA:   3'- ugUGGuUGUGGUGGUgGU-------UgUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 35563 0.67 0.9271
Target:  5'- cGCGcCCGGCGCCG-CGCCGAacgacgugcGCAGCg -3'
miRNA:   3'- -UGU-GGUUGUGGUgGUGGUUgu-------CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 35852 0.66 0.95124
Target:  5'- cGCGCgAGCugUACagggcCCAACGcGCGGCg -3'
miRNA:   3'- -UGUGgUUGugGUGgu---GGUUGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 37231 0.73 0.670825
Target:  5'- cCGCCAGaCGCCGCCGCgAACA-CAGUu -3'
miRNA:   3'- uGUGGUU-GUGGUGGUGgUUGUcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.