miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 37600 0.68 0.921518
Target:  5'- cCGCCAGCACCgggGCCcagggGCUAuucGCGGCGGg -3'
miRNA:   3'- uGUGGUUGUGG---UGG-----UGGU---UGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 37906 0.67 0.942332
Target:  5'- cGCGCC-ACGCC-UCGCCAugGG-GGCg -3'
miRNA:   3'- -UGUGGuUGUGGuGGUGGUugUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 37995 0.67 0.9271
Target:  5'- cACGCCGGCGgggguCCGacaaACCAuCGGCAGCc -3'
miRNA:   3'- -UGUGGUUGU-----GGUgg--UGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 38058 0.67 0.946909
Target:  5'- gACGCCcacGGCGuCCGCCGCgGGCAGgCugGGCu -3'
miRNA:   3'- -UGUGG---UUGU-GGUGGUGgUUGUC-G--UCG- -5'
5788 3' -53.3 NC_001806.1 + 38616 0.78 0.428607
Target:  5'- gGCugC-ACACCACCACCGGCcgGGUGGUg -3'
miRNA:   3'- -UGugGuUGUGGUGGUGGUUG--UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 39071 0.74 0.597364
Target:  5'- aGCGCCAcgaGCACCACCccgGCCAccACGGCGa- -3'
miRNA:   3'- -UGUGGU---UGUGGUGG---UGGU--UGUCGUcg -5'
5788 3' -53.3 NC_001806.1 + 39150 0.67 0.94091
Target:  5'- aGCGCCcgcaGACGCCcgacagccccuuggAUCGCCccggGGCGGCGGCc -3'
miRNA:   3'- -UGUGG----UUGUGG--------------UGGUGG----UUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 39454 0.67 0.942332
Target:  5'- -aACCAGguuuUGCCGCUggACCGACAGCucGCa -3'
miRNA:   3'- ugUGGUU----GUGGUGG--UGGUUGUCGu-CG- -5'
5788 3' -53.3 NC_001806.1 + 39568 0.7 0.844091
Target:  5'- -gGCCGGgGCCACCAUCuuGugGGCGGg -3'
miRNA:   3'- ugUGGUUgUGGUGGUGG--UugUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 40342 0.7 0.809433
Target:  5'- uGCACgCGACuauCCGCC-CCAGCAGUuccgauGCg -3'
miRNA:   3'- -UGUG-GUUGu--GGUGGuGGUUGUCGu-----CG- -5'
5788 3' -53.3 NC_001806.1 + 41431 0.73 0.681259
Target:  5'- cGCGCCGuggucgggguGCGCCGCCGCUu-CGGCGGa -3'
miRNA:   3'- -UGUGGU----------UGUGGUGGUGGuuGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 41778 0.66 0.959178
Target:  5'- cCGCCaAACGCC-CCAUCAuuuUGGUGGCg -3'
miRNA:   3'- uGUGG-UUGUGGuGGUGGUu--GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 42615 0.67 0.946909
Target:  5'- cGCGCCcugauCAUaCugCGCCG-CGGCGGCg -3'
miRNA:   3'- -UGUGGuu---GUG-GugGUGGUuGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 42775 0.71 0.781629
Target:  5'- uGCGCCAGgGCguCCugUAGC-GCGGCg -3'
miRNA:   3'- -UGUGGUUgUGguGGugGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 43792 0.72 0.742624
Target:  5'- uACGCUGGCGCCuGCCGCCcgaAACGGCGacGCc -3'
miRNA:   3'- -UGUGGUUGUGG-UGGUGG---UUGUCGU--CG- -5'
5788 3' -53.3 NC_001806.1 + 46163 0.66 0.966178
Target:  5'- cACACC--CACCACCGCCcccCGGgccccccgaaccCAGCg -3'
miRNA:   3'- -UGUGGuuGUGGUGGUGGuu-GUC------------GUCG- -5'
5788 3' -53.3 NC_001806.1 + 46223 0.67 0.932429
Target:  5'- gGCcCCGGCGgCggagACCACCcGCGGCAGg -3'
miRNA:   3'- -UGuGGUUGUgG----UGGUGGuUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 46304 0.68 0.915685
Target:  5'- gGCGCCAACccgauCCAagaCACCcgcGCAGgGGCu -3'
miRNA:   3'- -UGUGGUUGu----GGUg--GUGGu--UGUCgUCG- -5'
5788 3' -53.3 NC_001806.1 + 46428 0.66 0.968102
Target:  5'- uGCGCCGcggucggGCGCCugGCgGCCAugcaugcccggaugGCGGCGGUc -3'
miRNA:   3'- -UGUGGU-------UGUGG--UGgUGGU--------------UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 47414 0.67 0.937505
Target:  5'- -gACCAACGCCgACCugUAcCGGgAGUg -3'
miRNA:   3'- ugUGGUUGUGG-UGGugGUuGUCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.