miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5788 3' -53.3 NC_001806.1 + 47672 0.72 0.701988
Target:  5'- gUACCggUACCugCgcGCCAGCguccGGCAGCu -3'
miRNA:   3'- uGUGGuuGUGGugG--UGGUUG----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 48033 0.66 0.966178
Target:  5'- aGCACCuuaACCucCCGCUggUGcGCAGCg -3'
miRNA:   3'- -UGUGGuugUGGu-GGUGGuuGU-CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 49334 0.72 0.742624
Target:  5'- cCGCCcACAucCCAUCGCCGAgcguccCGGCAGCg -3'
miRNA:   3'- uGUGGuUGU--GGUGGUGGUU------GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 50432 0.7 0.818374
Target:  5'- cGCACguGCACCACCccGCCuuuGCGGacguGGCg -3'
miRNA:   3'- -UGUGguUGUGGUGG--UGGu--UGUCg---UCG- -5'
5788 3' -53.3 NC_001806.1 + 50549 0.81 0.284394
Target:  5'- cGCGCCGGCugC-UCGCCAACAGCGGg -3'
miRNA:   3'- -UGUGGUUGugGuGGUGGUUGUCGUCg -5'
5788 3' -53.3 NC_001806.1 + 50663 0.73 0.681259
Target:  5'- cGCACCGGCGCCGggACgAcGCGGCGGCc -3'
miRNA:   3'- -UGUGGUUGUGGUggUGgU-UGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 50695 0.72 0.741625
Target:  5'- cGCGCCAuucugGCCGCCGggcucguCCuGCAGCGGCu -3'
miRNA:   3'- -UGUGGUug---UGGUGGU-------GGuUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 51408 0.66 0.962792
Target:  5'- -gGCCGugGgCGCCuu--GCGGCAGCg -3'
miRNA:   3'- ugUGGUugUgGUGGugguUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 51446 0.74 0.627799
Target:  5'- -aGCCGGCguuucugACCugCACCGAUcGCAGCg -3'
miRNA:   3'- ugUGGUUG-------UGGugGUGGUUGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 51801 0.75 0.576495
Target:  5'- -gGCCAaguACGCCGCCACCGugGcCGGCc -3'
miRNA:   3'- ugUGGU---UGUGGUGGUGGUugUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 51830 0.66 0.966178
Target:  5'- -uGCgCGACGCCcuCCAUCGGauuCAGCAGUa -3'
miRNA:   3'- ugUG-GUUGUGGu-GGUGGUU---GUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 51892 0.73 0.670825
Target:  5'- cGC-CCAGCACCGaCACCGcACuGCGGCu -3'
miRNA:   3'- -UGuGGUUGUGGUgGUGGU-UGuCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 52019 0.69 0.860235
Target:  5'- uCGCCggUuCCucCCGCuCGGCGGCAGCc -3'
miRNA:   3'- uGUGGuuGuGGu-GGUG-GUUGUCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 52092 0.67 0.937505
Target:  5'- --cCCAGCGgCACgACCGGCuccauGCAGUg -3'
miRNA:   3'- uguGGUUGUgGUGgUGGUUGu----CGUCG- -5'
5788 3' -53.3 NC_001806.1 + 52864 0.69 0.852268
Target:  5'- gAC-CCGACagGCgACCGCCGGCGGCGa- -3'
miRNA:   3'- -UGuGGUUG--UGgUGGUGGUUGUCGUcg -5'
5788 3' -53.3 NC_001806.1 + 53034 0.7 0.827136
Target:  5'- cCACCcACGCCGCCucgGCCcgcgAACGGCAcGCc -3'
miRNA:   3'- uGUGGuUGUGGUGG---UGG----UUGUCGU-CG- -5'
5788 3' -53.3 NC_001806.1 + 53320 0.69 0.860235
Target:  5'- -aGCCAACGCCcUgACCAACGaCGGCc -3'
miRNA:   3'- ugUGGUUGUGGuGgUGGUUGUcGUCG- -5'
5788 3' -53.3 NC_001806.1 + 53771 0.67 0.9271
Target:  5'- cCGCCGACGCCGuCgACgAGCcGCAGg -3'
miRNA:   3'- uGUGGUUGUGGU-GgUGgUUGuCGUCg -5'
5788 3' -53.3 NC_001806.1 + 53854 0.66 0.959178
Target:  5'- gACGCguGCgACgGCgGCCAGCuguuuGGCAGCc -3'
miRNA:   3'- -UGUGguUG-UGgUGgUGGUUG-----UCGUCG- -5'
5788 3' -53.3 NC_001806.1 + 53903 0.66 0.959178
Target:  5'- uCGCCGggGCGCUacaGCCGCCGACcGCcuGCu -3'
miRNA:   3'- uGUGGU--UGUGG---UGGUGGUUGuCGu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.